Pairwise Alignments

Query, 324 a.a., tyrosine-type recombinase/integrase from Methanococcus maripaludis S2

Subject, 274 a.a., site-specific integrase from Methanococcus maripaludis JJ

 Score =  280 bits (716), Expect = 3e-80
 Identities = 152/324 (46%), Positives = 201/324 (62%), Gaps = 50/324 (15%)

Query: 1   MNELEKKLLYGTKSDPAVTTEEQNIYIKKFQEEREFDNIKPSTIKNDVTSLKVFLAFCEE 60
           MN+ + KLL   K +      E   ++ KF+EEREFD IK STI ND+T L         
Sbjct: 1   MNDFKNKLLLKPKKETQKEPPEVKKWLNKFREEREFDGIKSSTIGNDITRL--------- 51

Query: 61  IGKEPYSLTTHDFVIFFNMLNNRRNCTVRTQNRYFNLLKVFYRLLKYVNFKEFERESIER 120
                                                 KVFY+L++  NFK+F+ ES ER
Sbjct: 52  --------------------------------------KVFYQLMRLDNFKDFKDESQER 73

Query: 121 KRFSKFEKKHYDTINFDTYNRIIKEIILSNSRTRLRDALIVRVLWETGCRRSEALSIRYK 180
           KRFS FE KHYD I+ D  N I+  II S SRT++RDA I+R LW++ CR SEAL++ Y 
Sbjct: 74  KRFSGFEIKHYDAISSDLLNDIMNVIIESKSRTKIRDATIIRFLWDSECRISEALNLTYG 133

Query: 181 DCDFEKGRFRIRDTKTYEERTVVIAEETVEIVRDYIKENIKRDSNDYIFQNEMIQNGKRV 240
           D D E+G F +R+TK   ERTVV + +T+E++  Y++ NIK+ S D +FQN    NG+ +
Sbjct: 134 DSDLEEGTFVLRNTKGKAERTVVCSTDTLEVLNYYVQYNIKKGSKDRVFQN---SNGEPI 190

Query: 241 KLDWITNVFKKAVRKLKEEGVIPEGKRIVIHSLRHGRATDLLDKGVPIDVVKEILGHRSL 300
              WI  +F+KAV KLK++G IP  ++IV+HSLRHGRA DLL+KG PID+VKE LGH+SL
Sbjct: 191 GRGWIGEIFRKAVDKLKKDGKIPANRKIVVHSLRHGRAVDLLEKGQPIDIVKEYLGHKSL 250

Query: 301 ETTLYYSHSKERKNGMLDNIQKLL 324
           +TTL+YSHSKERK  M+ NIQK+L
Sbjct: 251 DTTLFYSHSKERKEKMIKNIQKIL 274