Pairwise Alignments

Query, 324 a.a., tyrosine-type recombinase/integrase from Methanococcus maripaludis S2

Subject, 332 a.a., site-specific integrase from Methanococcus maripaludis JJ

 Score =  132 bits (333), Expect = 9e-36
 Identities = 96/301 (31%), Positives = 148/301 (49%), Gaps = 14/301 (4%)

Query: 30  FQEEREFDNIKPSTIKNDVTSLKVFLAFCEEIGKEPYSLTTHDFVIFFNMLNNRRNCTVR 89
           ++ ER    IK  TIK D   +  F  + +E+G    +L    F +FF+ +  +R  +  
Sbjct: 34  YKNERIRMGIKEYTIKQDCYRVNFFFKWLKEMGFTQNNLNITTFELFFDYMRKKRKISNN 93

Query: 90  TQNRYFNLLKVFYRLLKYVNFKEFERESIERKRFSKFEKKHYDTINFDTYNRIIKEIILS 149
           TQN+    LK ++ ++      EF ++  ER  +   EKK  D I       +       
Sbjct: 94  TQNKIMISLKKYFEIINNPCMDEFLKK-YERSFYKAVEKKETDFIEPSDVKIMCDYFEEK 152

Query: 150 NSRTRLRDALIVRVLWETGCRRSEALSIRYKDCDFEKGRFRIRDTKTYEERTVVIAEETV 209
             ++  R  + +RVL+ET  R  E L IR +D DFEKG   +R+TKT   R V +++E  
Sbjct: 153 KEKSAFRCLVFLRVLFETAGRFGEVLKIRIRDIDFEKGIILLRETKTSIPRKVAVSKEAK 212

Query: 210 EIVRD---YIKENIK-RDSNDYIFQNEMIQNGKRVKLDWITNVFK----KAVRKLKEEGV 261
           +   D   Y+K   K +  +D +F +E       VK     N F     KAVR LK++  
Sbjct: 213 DGEIDTLTYLKFFSKGKSGDDCLFPSE-----DDVKKPMSKNAFYRHYVKAVRYLKDQNP 267

Query: 262 IPEGKRIVIHSLRHGRATDLLDKGVPIDVVKEILGHRSLETTLYYSHSKERKNGMLDNIQ 321
             + K I +H+LRH R  DLL +   I +VKE  GH ++ETT+ Y+H+ +R N  L   Q
Sbjct: 268 KLKNKHITVHTLRHSRIVDLLRQKHEIVLVKEYAGHENIETTMIYAHALQRMNETLPMFQ 327

Query: 322 K 322
           +
Sbjct: 328 E 328