Pairwise Alignments

Query, 324 a.a., tyrosine-type recombinase/integrase from Methanococcus maripaludis S2

Subject, 319 a.a., site-specific recombinase, phage integrase family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 84.3 bits (207), Expect = 4e-21
 Identities = 77/312 (24%), Positives = 130/312 (41%), Gaps = 44/312 (14%)

Query: 26  YIKKFQEEREFDNIKPSTIKNDVTSLKVFLAFCEEIGKEPYSLTTHDFVIFFNMLNNRRN 85
           ++   Q+E         T K  +  +K F+ F  +  + P ++ T +   F   L N+RN
Sbjct: 7   FLSGLQQEMRMRGYSIRTEKTYLYWIKAFINFHGK--RHPETMGTEEVAQFLTFLANQRN 64

Query: 86  CTVRTQNRYFNLLKVFYRLLKYVNFKEFERESIERKRFSKFEKKHYDTINFDTYNRIIKE 145
             + TQ    N L   Y+       K    E  +       ++++  T+   +      E
Sbjct: 65  VAINTQKIALNALAYLYQ-------KHLHHELGDLGFCYATKQRYLPTVLSPS------E 111

Query: 146 IILSNSRTRLRDALIVRVLWETGCRRSEALSIRYKDCDFEKGRFRIRDTKTYEERTVVIA 205
           I L  +    RD LI+ +L+ +G R SE L +R +D D E     +RD K +++R  +++
Sbjct: 112 ISLILNELDGRDRLIIELLYGSGLRVSECLRLRIQDIDIESASLTVRDGKGHKDRQTILS 171

Query: 206 EETVEIVRDYIKENIK--RDSN------------DYIFQNEMIQNGKRVKLDWIT----- 246
               E +  YI++ IK  +D N            +  + N   Q+G        +     
Sbjct: 172 HRCAEKLTTYIEKAIKIQQDDNQQGIGPSLPNALERKYPNAFRQHGWMFIFPSTSTCINP 231

Query: 247 --------NVFKKAVRKLKEEGV--IPEGKRIVIHSLRHGRATDLLDKGVPIDVVKEILG 296
                   ++ +  +RK     V  I   KR+  H+ RH  AT LL  G  I  V+E+LG
Sbjct: 232 YTGTLCRHHLHQSVIRKALGNAVRNIQMNKRVTCHTFRHSFATHLLQAGRDIRSVQELLG 291

Query: 297 HRSLETTLYYSH 308
           H  + TT  Y+H
Sbjct: 292 HNDVSTTQIYTH 303