Pairwise Alignments

Query, 324 a.a., tyrosine-type recombinase/integrase from Methanococcus maripaludis S2

Subject, 300 a.a., integrase/recombinase XerD (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 58.9 bits (141), Expect = 1e-13
 Identities = 53/216 (24%), Positives = 101/216 (46%), Gaps = 9/216 (4%)

Query: 93  RYFNLLKVFYRLLKYVNFKEFERESIERKRFSKFEKKHYDTINFDTYNRIIKEIILSNSR 152
           R  + L+ FY  L  +  K+   + + +    K  +   D+++    +R++ E  + +  
Sbjct: 77  RLLSSLRRFYNYL--LQTKQISGDPMAQIESPKLSRHLPDSLSESQVDRLLAEPNVDDP- 133

Query: 153 TRLRDALIVRVLWETGCRRSEALSIRYKDCDFEKGRFRIRDTKTYEERTVVIAEETVEIV 212
              RD  ++ +L+ TG R SE + +  +     +G  RI   K  +ER V + E  +  V
Sbjct: 134 VECRDKAMLELLYATGLRVSELVGLTMEQMSLRQGLVRIIG-KGGKERLVPMGEMAITEV 192

Query: 213 RDYIKENIKRDSNDYIFQNEMIQNGKRVKLDWITNVFKKAVRKLKEEGVIPEGKRIVIHS 272
             Y+  + + +   +I Q++++   KR ++      + +        G+  E   +  H+
Sbjct: 193 EHYLT-SARHELLGHI-QSDVVFPSKRSQMMTRQTFWHRIKLYASRAGIETE---LSPHT 247

Query: 273 LRHGRATDLLDKGVPIDVVKEILGHRSLETTLYYSH 308
           LRH  AT LL+ G  + VV+ +LGH  L TT  Y+H
Sbjct: 248 LRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTH 283