Pairwise Alignments

Query, 324 a.a., tyrosine-type recombinase/integrase from Methanococcus maripaludis S2

Subject, 474 a.a., site-specific recombinase, phage integrase family (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score = 57.8 bits (138), Expect = 5e-13
 Identities = 44/157 (28%), Positives = 76/157 (48%), Gaps = 12/157 (7%)

Query: 154 RLRDALIVRVLWETGCRRSEALSIRYKDCDFEKGRFRIRDTKTYEERTVVIAEETVEIVR 213
           R RD  +  +L+ +G R SEAL +   D D   G  R+   K  +ER   +++ +V+ +R
Sbjct: 259 RRRDLALAELLYGSGLRISEALGLDVLDADPSAGVVRVLG-KGSKERMSPLSDTSVDALR 317

Query: 214 DYI--KENIKRDSNDYIFQNEMIQNGKRVKLDWITNVFKKAVRKLKEEGVIPEGKRIVIH 271
           +++  + ++  +    +F       G R+     T +     R+      +P+   +  H
Sbjct: 318 EWLHFRHHLASEGERALFVGA---RGDRLDRRQATRIIDALCRRAG----LPQS--VSPH 368

Query: 272 SLRHGRATDLLDKGVPIDVVKEILGHRSLETTLYYSH 308
            LRH  AT LL+ G  +  V+E+LGH  L TT  Y+H
Sbjct: 369 GLRHSFATHLLEAGADLRSVQELLGHARLATTQRYTH 405