Pairwise Alignments

Query, 324 a.a., tyrosine-type recombinase/integrase from Methanococcus maripaludis S2

Subject, 294 a.a., site-specific recombinase, phage integrase family (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score = 55.5 bits (132), Expect = 2e-12
 Identities = 70/265 (26%), Positives = 116/265 (43%), Gaps = 21/265 (7%)

Query: 47  DVTSLKVFLAFCEEIGKEPYSLTTHDFVIFFNMLN-NRRNCTVRTQNRYFNLLKVFYRLL 105
           D+  L+VFL   EE G         +  +F ++++  RR    RT  R+   L+ F+   
Sbjct: 25  DLIELQVFL---EERGC--LLAEVDEQTLFMHVVDLRRRGMAGRTLARHLATLRGFFAFA 79

Query: 106 KYVNFKEFERESIERKRFSKFEKKHYDTINFDTYNRIIKEIILSNSRTRLRDALIVRVLW 165
             V   E E +        K  +   D +  D    I+    LS+ R   RD  ++ +++
Sbjct: 80  --VGEGELEADPALFLENPKLARNLPDVLTRDEMATILARPDLSD-RLGFRDRTMLELMY 136

Query: 166 ETGCRRSEALSIRYKDCDFEKGRFRIRDTKTYEERTVVIAEETVEIVRDYIKENIKRDS- 224
             G R SE  ++R  D D + G  R+   K  +ER V +   +  +V  Y+++     S 
Sbjct: 137 AAGLRVSELCALRPLDFDAQAGVVRVFG-KGAKERIVPVHHVSCALVTAYLRDWRPAFSP 195

Query: 225 -NDYIFQNEMIQNGKRVKLDWITNVFKKAVRKLKEEGVIPEGKRIVIHSLRHGRATDLLD 283
               +F N   ++GK +    +  V K   R + E G+    K I  H+ RH  AT LL+
Sbjct: 196 VEPAMFLN---RSGKGLSRQAVWKVVK---RHVAEAGI---HKDISPHTFRHSFATHLLE 246

Query: 284 KGVPIDVVKEILGHRSLETTLYYSH 308
            G  +  V+ +LGH  +  T  Y+H
Sbjct: 247 GGADLRSVQLLLGHADISATEIYTH 271