Pairwise Alignments

Query, 309 a.a., hypothetical protein from Methanococcus maripaludis S2

Subject, 666 a.a., selenocysteine-specific elongation factor from Sinorhizobium meliloti 1021

 Score = 82.8 bits (203), Expect = 2e-20
 Identities = 80/331 (24%), Positives = 154/331 (46%), Gaps = 37/331 (11%)

Query: 8   LFGDFEDAGKNIAKKGTSTDITLYNHKNGDDSAV-FVEPTRYPERIQPLIYTINMMDYAL 66
           L G   D  K    +G + D+     +   D+   FV+   +   I  ++     +DYA+
Sbjct: 20  LTGVDTDRLKEEKARGITIDLGFAYARFAKDAVTGFVDVPGHERFIHTMLAGAGGIDYAM 79

Query: 67  VFI---DEIKPEIGETLLTLDLFGVERGFIVV--GEYVD-------VEQLKGIISNTSMK 114
           + +   D IKP+  E L  LDL GV RG + +   +  D        +++  ++S+TS++
Sbjct: 80  LVVAADDGIKPQTLEHLAILDLLGVSRGLVAITKADLADPARLENLTDEIGAVLSSTSLR 139

Query: 115 NFEFLEKDY-----IQIREKMITIPEVEKSSDFI----KIPIDHFFSVKSVGTVILGKVD 165
           + E L         I++ ++ +   E   ++  +    ++ +D  F++   GTV+ G V 
Sbjct: 140 DAEILPVSVAAGQGIELLKERLAAAECATAASAVGGRFRLAVDRSFTLSGAGTVVTGTVL 199

Query: 166 KGSVSVHDNLRIYPTNNKAMVKSVQVHDRDVKEAETNSRVGLSL--KGISVDDLDRGMIL 223
            GSV V D + + P    A V+S+   ++  +      R  L+L  +GIS D + RG ++
Sbjct: 200 SGSVGVGDQVTVSPAGRSARVRSIHAQNQRAERGFAGQRCALNLAGEGISKDAITRGDMV 259

Query: 224 SNGDLEV-SDKIELEMKWNPYMNKEVAVGEGY-------QIIVGLQTVSCKIEEKNGNKL 275
            +  L   SD+++ ++  +   ++   +GE +           G++ V  +     G + 
Sbjct: 260 VDPHLHAPSDRLDADL--SVLESETKPIGEWFSARFHHASAETGIRIVPLEGPLLPGERR 317

Query: 276 TLKLL--KPAAFEKGDKFIMLDGSAKIRIIG 304
            ++L+  +P A   GD+FI+ D SA+ R IG
Sbjct: 318 RVQLVLDRPIAAAVGDRFILRDVSAR-RTIG 347