Pairwise Alignments

Query, 309 a.a., hypothetical protein from Methanococcus maripaludis S2

Subject, 468 a.a., selenocysteine-specific translation elongation factor from Methanococcus maripaludis JJ

 Score = 94.7 bits (234), Expect = 4e-24
 Identities = 68/281 (24%), Positives = 131/281 (46%), Gaps = 43/281 (15%)

Query: 2   KNVTIGLFGDFEDAGKNIAK-------------------KGTSTDITLYNHKNGDDSAVF 42
           KN+ +G+FG  +     ++K                   +G + DI     K  +     
Sbjct: 4   KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITL 63

Query: 43  VEPTRYPERIQPLIYTINMMDYALVFIDEI---KPEIGETLLTLDLFGVERGFIVV-GEY 98
           V+   + + I+ ++   +++D AL+ +D     K + GE +L LD F +    ++   + 
Sbjct: 64  VDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDN 123

Query: 99  VDVEQLKG--IISNTSMKNFEFLEKDYI------------QIREKMITIPE----VEKSS 140
              E++K   +I  + +++   L+   I            +++  +IT       +  + 
Sbjct: 124 AGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIITTLNNAEIIRNTE 183

Query: 141 DFIKIPIDHFFSVKSVGTVILGKVDKGSVSVHDNLRIYPTNNKAMVKSVQVHDRDVKEAE 200
            + K+P+DH F +K  GTV+ G ++KG V V D L++ P N    V+S+Q     V EA+
Sbjct: 184 SYFKMPLDHAFPIKGAGTVVTGTINKGIVKVGDELKVLPINMSTKVRSIQYFKESVMEAK 243

Query: 201 TNSRVGLSLKGISVDDLDRGMILSNGD--LEVSDKIELEMK 239
              RVG++++G+    + RG IL++ D  L+  DKI  ++K
Sbjct: 244 AGDRVGMAIQGVDAKQIYRGCILTSKDTKLQTVDKIVAKIK 284