Pairwise Alignments

Query, 450 a.a., MATE family efflux transporter from Methanococcus maripaludis S2

Subject, 495 a.a., MATE efflux family protein (RefSeq) from Shewanella loihica PV-4

 Score = 81.3 bits (199), Expect = 7e-20
 Identities = 80/349 (22%), Positives = 157/349 (44%), Gaps = 29/349 (8%)

Query: 12  INNLMIRYVIPSIAGTVIIGIYGI-----IDGIFIGRTIGAEGLAGVTFSFPVLIAISSI 66
           +   ++R+++  ++ T  IGI  +     ID  F+      E  A V ++  +    +SI
Sbjct: 7   VQGSIMRHILV-MSSTAAIGISALFVVDLIDIFFLSLLGEQELAAAVGYAGTISFFTTSI 65

Query: 67  GVMIGAGSSAIISISLGKKDYKKASCILKTALTYIILIS----LIITCFGYLLIDPVISF 122
           G+ +     A++S ++G K+++ A  +L  +    +L++    +I+TCF    I  +++ 
Sbjct: 66  GIGLSIALGALVSRAVGAKEFELAKRLLLNSAVVTVLVASVVAIIVTCF----IPELLTL 121

Query: 123 MNLSKNLESYVVGYSKIIILGAIAQIFAISLDPILRNDGFPKKSMIILALMSVFNIILDY 182
           +  +        GY  I++        A++L   LR  G  K SM+        N++ D 
Sbjct: 122 VGATGRTGELAAGYLYILVPSMPIICLAMALGAALRAVGDAKLSMVSTLTGGGVNLVFDP 181

Query: 183 MLIVVFNFGVMGAAAATVLAQGLGSIL------YLKHFLSGKSNVKIGKNSPFLEFSLIK 236
           + I +   G+ GAA A+VLA+ L  +L       +KH L G+ ++   K         IK
Sbjct: 182 IFIFLLAMGIEGAALASVLAR-LAVLLVAARGVVVKHKLFGRFDLTAFKED-------IK 233

Query: 237 RIAKTGFSPFIMELAFGILMIVHNIQFMRYGSSLDVSAYGIVIYITSFLYMVYLGISEGV 296
            I        +  +A  I   V       +G S  V+A+ ++  +T   + +   +S  +
Sbjct: 234 PIFAIAGPAMMTNIATPIGNAVVTRAIAEFGDSY-VAAWAVLGRLTPVAFGMIFALSGAI 292

Query: 297 QPLISYNHGAKKFNRVFEILKKAVFVNAILGICSFLTILKFPNLLIKIF 345
            P++  N GA++F RV + L KA+   A+  +   L ++     ++ +F
Sbjct: 293 GPIVGQNFGAREFARVRQSLTKALQFCALYVVTVSLLLMLLQEQIVALF 341