Pairwise Alignments

Query, 951 a.a., excinuclease ABC subunit UvrA from Methanococcus maripaludis S2

Subject, 1003 a.a., excinuclease ABC subunit A from Synechococcus elongatus PCC 7942

 Score =  981 bits (2536), Expect = 0.0
 Identities = 533/990 (53%), Positives = 687/990 (69%), Gaps = 60/990 (6%)

Query: 4   IIIKGAREHNLKNISLTLPRNNLIVVTGVSGSGKSTIAFDTIYAEGQRRYVESLSAYARQ 63
           I ++GAR+HNL+N+ L LPRN LIV TGVSGSGKS++AFDTI+AEGQRRYVESLSAYARQ
Sbjct: 28  IRVRGARQHNLQNLDLDLPRNQLIVFTGVSGSGKSSLAFDTIFAEGQRRYVESLSAYARQ 87

Query: 64  FLGLMNKPDVDSIEGLSPAIAIQQKTTSKNPRSTVGTVTEIYDYLRLLYARIGIPYCPEH 123
           FLG ++KPDVD+IEGLSPAI+I QK+TS NPRSTVGTVTEIYDYLRLL+ R G P+CP  
Sbjct: 88  FLGQVDKPDVDAIEGLSPAISIDQKSTSHNPRSTVGTVTEIYDYLRLLFGRAGAPHCPHC 147

Query: 124 NIRIESQSPEKIAEKIEEEFSET-VTILSPIVRQKKGTYQKLFKDLNSEGFARIRVNGEI 182
           +  I  Q+ +++ +++ E    +   IL+P+VR KKGT++KL   L +EGF R+R+NGE+
Sbjct: 148 DRSIAPQTIDQMVDRLAELPDRSRFQILAPVVRGKKGTHKKLLSSLAAEGFVRVRINGEV 207

Query: 183 YRTDDEITLERYKKHDIEIVIDRLTPKDD-HSRLVEACERALERSGGLLIV--------- 232
               D I L++   H IEIV+DRL  K     RLV++    L RS G+ ++         
Sbjct: 208 RELSDSIELDKNHAHTIEIVVDRLVQKAGIQERLVDSLTTCLRRSEGIAVIDVLPGDRGN 267

Query: 233 ---------------TGTKNNEE---IEKIYSSNLACPICGISFEELQPRMFSFNSPFGA 274
                          TG + N E    E ++S N ACP  G   EEL PR+FSFNSP+GA
Sbjct: 268 VITLPVEHHSSRAADTGAEYNREPQGYELVFSENFACPEHGAVMEELSPRLFSFNSPYGA 327

Query: 275 CEYCSGLGIKMEFDADLIIPDKNKCIADGAVALYRNFLDGYRSQHLAAVANHFGFTVLTP 334
           C +C GLG    F  +L++PD N  +   A+A +      Y    L  VA   GF +   
Sbjct: 328 CSHCHGLGTLRTFSPELVVPDPNLPVY-AAIAPWSEKDHSYYFNLLCGVAEVSGFEISDR 386

Query: 335 IKDLSKEQLDILMYGSPEKIHFKVSNGSGDTEWSQNKPWEGLIPQSIRLYNETKSEYRRK 394
            +DL+ +Q   +++GS E I  +  +   D     ++P+EG+IP   R Y ET SE  ++
Sbjct: 387 WQDLTPDQQHAILFGSSEPIAVETDSRFRDRHL-YHRPFEGVIPILERQYRETSSEVYKQ 445

Query: 395 ELEKFMKVSLCPKCGGKRLKDKALAVKIEDKSIIDLTDLSISKAEEFFNNLK-------- 446
           +LEK++    C  C G RLK ++LAV++    I DLT +S+    E  N ++        
Sbjct: 446 KLEKYLVDQTCEVCHGLRLKPESLAVRMGPYRITDLTSVSV---RECLNKIEALIGSDNR 502

Query: 447 ---LTDKEYEIAKQVIKEIKSRLKFLNDVGLGYLTLSRRSGTLSGGEAQRIRLATQIGSN 503
              LT ++ +I   V++EI++RL+FL DVGL YLTL R + TLSGGEAQRIRLATQIG+ 
Sbjct: 503 EPLLTARQMQIGDLVLREIQARLRFLLDVGLDYLTLDRPAMTLSGGEAQRIRLATQIGAG 562

Query: 504 LTGVLYVLDEPSIGLHQRDNQKLIETLHKLRNLDNTLVVVEHDEDTILNADYVVDMGPGA 563
           LTGVLYVLDEPSIGLHQRDN +L+ TL +LR+L NTL+VVEHDEDTI  AD++VD+GPGA
Sbjct: 563 LTGVLYVLDEPSIGLHQRDNDRLLNTLIRLRDLGNTLIVVEHDEDTIRAADHLVDIGPGA 622

Query: 564 GVHGGDVVAVGTPMEISKNKDSLTGKYLSGELKIEIPKNRRKSD-KFLKLSNCRQNNLKD 622
           GVHGG +VA G   ++   ++SLTG YLSG  +I  P +RR  + + L L    +NNL++
Sbjct: 623 GVHGGRIVAQGNLNQLLTAEESLTGAYLSGRRRIATPDSRRAGNGRRLLLQGANRNNLQN 682

Query: 623 VSVEIPTGVFNVITGVSGSGKSTLIYENLYPALKEKIKSDESVG-ELDFEDQLYENTKEK 681
           + VEIP G    ITGVSGSGKSTLI E L+PAL      + S+G ++ F   L       
Sbjct: 683 LDVEIPLGKLVCITGVSGSGKSTLINELLHPAL------EHSLGLKVPFPKGL------- 729

Query: 682 CNLEINSEIDKVVVIDQSPIGRTPRSNPATYTKVFDKIRQVFAETKEAKIKGYGPGRFSF 741
             L+    IDKV+VIDQSPIGRTPRSNPATYT  FD IRQVFA T EAK +GY PG+FSF
Sbjct: 730 AVLKGTKAIDKVIVIDQSPIGRTPRSNPATYTGAFDPIRQVFAATTEAKARGYQPGQFSF 789

Query: 742 NVKGGRCENCQGDGVIKIEMNFLPDVFVECEECKGARYNHETLEVKYKGKSISDVLNMSV 801
           NVKGGRCE C G GV  IEMNFLPDV+V+C+ CKGARYN ETL+VKYKGK+I+DVLNM+V
Sbjct: 790 NVKGGRCEACGGQGVNVIEMNFLPDVYVQCDVCKGARYNRETLQVKYKGKTIADVLNMTV 849

Query: 802 EEAREHFKNIPQISNKLKTLCDVGLGYIKLGQSSTTLSGGEAQRIKLTRELSKRATGNTI 861
           EEA + F+NIPQ S++L+TL DVGLGY++LGQ + TLSGGEAQR+KL  EL++RATG T+
Sbjct: 850 EEAAQFFENIPQASSRLQTLVDVGLGYVRLGQPAPTLSGGEAQRVKLATELARRATGKTL 909

Query: 862 YLLDEPTTGLHFHDVKKLIDVLNSLVEKGNTVVVIEHNLDVIKCADHIIDLGPEGGEFGG 921
           YL+DEPTTGL F+DV KL+DV+  LV+KGN++VVIEHNLDVI+CAD IIDLGPEGG+ GG
Sbjct: 910 YLIDEPTTGLSFYDVHKLLDVMQRLVDKGNSIVVIEHNLDVIRCADWIIDLGPEGGDRGG 969

Query: 922 EIIATGTPEEIAKCKLSHTGKFLKNILSKN 951
           EI+  G PE +A    SHTG++L  +L+++
Sbjct: 970 EIVVCGEPEIVATHNQSHTGRYLAQVLAQH 999