Pairwise Alignments

Query, 951 a.a., excinuclease ABC subunit UvrA from Methanococcus maripaludis S2

Subject, 973 a.a., excinuclease ABC subunit A from Sinorhizobium meliloti 1021

 Score = 1035 bits (2676), Expect = 0.0
 Identities = 536/974 (55%), Positives = 700/974 (71%), Gaps = 38/974 (3%)

Query: 1   MKDIIIKGAREHNLKNISLTLPRNNLIVVTGVSGSGKSTIAFDTIYAEGQRRYVESLSAY 60
           +K I I+GAREHNLK I L LPRN LIV+TG+SGSGKS++AFDTIYAEGQRRYVESLSAY
Sbjct: 4   LKTISIRGAREHNLKGIDLDLPRNKLIVMTGLSGSGKSSLAFDTIYAEGQRRYVESLSAY 63

Query: 61  ARQFLGLMNKPDVDSIEGLSPAIAIQQKTTSKNPRSTVGTVTEIYDYLRLLYARIGIPYC 120
           ARQFL +M KPDVD I+GLSPAI+I+QKTTS+NPRSTVGTVTEIYDYLRLL+AR+G+PY 
Sbjct: 64  ARQFLEMMQKPDVDQIDGLSPAISIEQKTTSRNPRSTVGTVTEIYDYLRLLFARVGVPYS 123

Query: 121 PEHNIRIESQSPEKIAEKIEEEFSET-VTILSPIVRQKKGTYQKLFKDLNSEGFARIRVN 179
           P   + IESQ+  ++ +++ E    T + +L+P+VR +KG Y+K   +L  +GF R++V+
Sbjct: 124 PATGLPIESQTVSQMVDRVLEFGEGTRLYMLAPLVRGRKGEYRKELAELMKKGFQRVKVD 183

Query: 180 GEIYRTDDEITLERYKKHDIEIVIDRLTPKDD-HSRLVEACERALERSGGLLIVT----- 233
           G+ Y   D   L++  KHDI++V+DR+  + D  +RL ++ E  L  + GL I       
Sbjct: 184 GQFYEIADVPALDKKYKHDIDVVVDRVVVRPDIGTRLADSIETCLTLADGLAIAEFADRP 243

Query: 234 ---------GTKN---NEEIEKI-YSSNLACPICGISFEELQPRMFSFNSPFGACEYCSG 280
                    G+ N   NE  E++ +S   ACP+ G +  E++PR+FSFN+PFGAC  C G
Sbjct: 244 LPPEETSAGGSANKSLNETHERVLFSEKFACPVSGFTIPEIEPRLFSFNNPFGACTTCDG 303

Query: 281 LGIKMEFDADLIIPDKNKCIADGAVALYRNFLDGYRSQHLAAVANHFGFTVLTPIKDLSK 340
           LG + + D  LI+P+ N+ + DGA+A +      Y +Q L A+   FGF + +   +LS+
Sbjct: 304 LGSQQKIDEALIVPEPNRTLRDGAIAPWAKSTSPYYNQTLEALGTVFGFKLGSRWSELSE 363

Query: 341 EQLDILMYGSPEKIHFKVSNGSGDTEWSQNKPWEGLIPQSIRLYNETKSEYRRKELEKFM 400
           E  + +++G+ +KI F   +G+    ++  K +EG++P   R + ET S + R+E+E++M
Sbjct: 364 EAQEAILHGTKDKITFHYQDGA--RSYNTTKTFEGIVPNLERRWKETDSAWAREEIERYM 421

Query: 401 KVSLCPKCGGKRLKDKALAVKIEDKSIIDLTDLSISKAEEFFNNLK--LTDKEYEIAKQV 458
             + CP C G RLK +ALAVKI    I +++++SI  A ++F  L   L+ K+ EIA ++
Sbjct: 422 SAAPCPACAGYRLKPEALAVKIHALHIGEVSEMSIRAARDWFEVLPEHLSTKQNEIAVRI 481

Query: 459 IKEIKSRLKFLNDVGLGYLTLSRRSGTLSGGEAQRIRLATQIGSNLTGVLYVLDEPSIGL 518
           +KEI+ RL+FLNDVGL YL+LSR SGTLSGGE+QRIRLA+QIGS LTGVLYVLDEPSIGL
Sbjct: 482 LKEIRERLRFLNDVGLEYLSLSRNSGTLSGGESQRIRLASQIGSGLTGVLYVLDEPSIGL 541

Query: 519 HQRDNQKLIETLHKLRNLDNTLVVVEHDEDTILNADYVVDMGPGAGVHGGDVVAVGTPME 578
           HQRDN +L++TL  LR++ NT++VVEHDED IL ADYVVD+GP AG+HGG+V+A GTP +
Sbjct: 542 HQRDNARLLDTLRHLRDIGNTVIVVEHDEDAILTADYVVDIGPAAGIHGGEVIAEGTPSD 601

Query: 579 ISKNKDSLTGKYLSGELKIEIPKNRRKSDKFLKLS--NCRQNNLKDVSVEIPTGVFNVIT 636
           I  N  SLTGKYLSGEL + +P  RRK  K  +++    R NNLK+V+  IP GVF  +T
Sbjct: 602 IMSNPKSLTGKYLSGELSVAVPGERRKPKKKKEVTVVGARANNLKNVTASIPLGVFTAVT 661

Query: 637 GVSGSGKSTLIYENLYPALKEKIKSDESVGELDFEDQLYENTKEKCNLEINSEIDKVVVI 696
           GVSG GKST + E LY A   ++                EN  E   ++    IDKV+ I
Sbjct: 662 GVSGGGKSTFLIETLYKAAARRVMGAR------------ENPAEHDRIDGFEHIDKVIDI 709

Query: 697 DQSPIGRTPRSNPATYTKVFDKIRQVFAETKEAKIKGYGPGRFSFNVKGGRCENCQGDGV 756
           DQSPIGRTPRSNPATYT  F  IR  FA   EAK +GY PGRFSFNVKGGRCE CQGDGV
Sbjct: 710 DQSPIGRTPRSNPATYTGAFTPIRDWFAGLPEAKARGYQPGRFSFNVKGGRCEACQGDGV 769

Query: 757 IKIEMNFLPDVFVECEECKGARYNHETLEVKYKGKSISDVLNMSVEEAREHFKNIPQISN 816
           IKIEM+FLPDV+V C+ C G RYN ETL+V +KGKSI+DVL+M+VEE  E F  +P + +
Sbjct: 770 IKIEMHFLPDVYVTCDVCHGKRYNRETLDVHFKGKSIADVLDMTVEEGVEFFAAVPAVRD 829

Query: 817 KLKTLCDVGLGYIKLGQSSTTLSGGEAQRIKLTRELSKRATGNTIYLLDEPTTGLHFHDV 876
           KL TL  VGLGYIK+GQ + TLSGGEAQR+KL +ELSKR+TG T+Y+LDEPTTGLHFHDV
Sbjct: 830 KLVTLNQVGLGYIKIGQQANTLSGGEAQRVKLAKELSKRSTGRTLYILDEPTTGLHFHDV 889

Query: 877 KKLIDVLNSLVEKGNTVVVIEHNLDVIKCADHIIDLGPEGGEFGGEIIATGTPEEIAKCK 936
            KL++VL+ LV +GN+VVVIEHNL+VIK AD IID GPEGG+ GGE+IA GTPEE+ K  
Sbjct: 890 AKLLEVLHELVNQGNSVVVIEHNLEVIKTADWIIDFGPEGGDGGGEVIAQGTPEEVVKEP 949

Query: 937 LSHTGKFLKNILSK 950
            S+TG+FLK +L +
Sbjct: 950 RSYTGQFLKELLER 963