Pairwise Alignments

Query, 951 a.a., excinuclease ABC subunit UvrA from Methanococcus maripaludis S2

Subject, 941 a.a., excinuclease ABC, A subunit (RefSeq) from Shewanella loihica PV-4

 Score =  998 bits (2579), Expect = 0.0
 Identities = 526/956 (55%), Positives = 683/956 (71%), Gaps = 25/956 (2%)

Query: 1   MKDIIIKGAREHNLKNISLTLPRNNLIVVTGVSGSGKSTIAFDTIYAEGQRRYVESLSAY 60
           M  I ++GAR HNLKNI+LT+PR+ LIV+TG+SGSGKS++AFDT+YAEGQRRYVESLSAY
Sbjct: 1   MDKIEVRGARTHNLKNINLTIPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAY 60

Query: 61  ARQFLGLMNKPDVDSIEGLSPAIAIQQKTTSKNPRSTVGTVTEIYDYLRLLYARIGIPYC 120
           ARQFL LM KPDVD IEGLSPAI+I+QK+TS NPRSTVGT+TEIYDYLRLL+AR+G P C
Sbjct: 61  ARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEIYDYLRLLFARVGEPRC 120

Query: 121 PEHNIRIESQSPEKIAEKIEE--EFSETVTILSPIVRQKKGTYQKLFKDLNSEGFARIRV 178
           P HN  + +Q+  ++ +K+    E S  + +L+P++  +KG + KL   L ++GF R R+
Sbjct: 121 PTHNQPLAAQTVSQMVDKVLTLPEGSRQM-LLAPVINDRKGEHVKLLDSLAAQGFIRARI 179

Query: 179 NGEIYRTDDEITLERYKKHDIEIVIDRLTPKDD-HSRLVEACERALERSGGLLIVTGTKN 237
           +GE+    D   LE + KH IE+V+DR   +DD   RL E+ E ALE SGG+  V     
Sbjct: 180 DGEVCDLSDPPALELHVKHTIEVVVDRFKVRDDLQQRLAESFETALELSGGIATVASMDG 239

Query: 238 NEEIEKIYSSNLACPICGISFEELQPRMFSFNSPFGACEYCSGLGIKMEFDADLIIPDKN 297
           + E E ++S+N AC  CG S  EL+PR+FSFN+P GAC  C GLG++  FDAD +I +  
Sbjct: 240 DSE-ELLFSANFACTHCGYSMAELEPRIFSFNNPAGACPTCDGLGVQQFFDADRVITNTE 298

Query: 298 KCIADGAVALY--RNFLDGYRSQHLAAVANHFGFTVLTPIKDLSKEQLDILMYGS-PEKI 354
             +A GA+  +  RNF   Y  Q L ++A H+ F V  P + LS +  +I+++GS  E I
Sbjct: 299 LSLAGGAIRGWDRRNF---YYFQMLTSLAEHYKFDVEAPFEKLSAKIRNIVLHGSGKESI 355

Query: 355 HFKVSNGSGDTEWSQNKPWEGLIPQSIRLYNETKSEYRRKELEKFMKVSLCPKCGGKRLK 414
            FK  N  GD    +N P+EG++    R Y ET+S   R+EL K++    C  CGG RL+
Sbjct: 356 AFKYINDRGDVV-VRNHPFEGILNNMDRRYRETESNAVREELAKYINTQACSSCGGSRLR 414

Query: 415 DKALAVKIEDKSIIDLTDLSISKAEEFFNNLKLTDKEYEIAKQVIKEIKSRLKFLNDVGL 474
           ++A  V IED ++  LTD SI +A E+F  L LT +  +IA++++KE++ RL FL +VGL
Sbjct: 415 EEARHVFIEDLNLPRLTDWSIGEAMEYFEQLSLTGQRAQIAEKILKEVRDRLGFLVNVGL 474

Query: 475 GYLTLSRRSGTLSGGEAQRIRLATQIGSNLTGVLYVLDEPSIGLHQRDNQKLIETLHKLR 534
            YL+LSR + TLSGGEAQRIRLA+QIG+ L GV+YVLDEPSIGLHQRDN++L+ TL  LR
Sbjct: 475 NYLSLSRSADTLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLNTLIHLR 534

Query: 535 NLDNTLVVVEHDEDTILNADYVVDMGPGAGVHGGDVVAVGTPMEISKNKDSLTGKYLSGE 594
           +L NT++VVEHDED I  AD+++D+GPGAGVHGG V+  G   EI    +S+TG+Y+SG+
Sbjct: 535 DLGNTVIVVEHDEDAIRMADHIIDIGPGAGVHGGQVICDGPLKEIVACDESVTGQYISGK 594

Query: 595 LKIEIPKNRRKSD--KFLKLSNCRQNNLKDVSVEIPTGVFNVITGVSGSGKSTLIYENLY 652
            +I I + R + D  K ++L     NNLK V + IP G+F  +TGVSGSGKSTLI +  Y
Sbjct: 595 KQIHISEKRAQYDASKVIELFGASGNNLKQVDLTIPVGLFTCVTGVSGSGKSTLINDTFY 654

Query: 653 PALKEKIKSDESVGELDFEDQLYENTKEKCNLEINSEIDKVVVIDQSPIGRTPRSNPATY 712
                KI   +  G    E   Y+              DKVV IDQSPIGRTPRSNPATY
Sbjct: 655 -----KIAHRQLNGATVDEPAPYKKVAGM------DHCDKVVDIDQSPIGRTPRSNPATY 703

Query: 713 TKVFDKIRQVFAETKEAKIKGYGPGRFSFNVKGGRCENCQGDGVIKIEMNFLPDVFVECE 772
           T +F  IR++FA T+EA+ +GY PGRFSFNVKGGRCE CQGDG+IK+EM+FLPDV+V C+
Sbjct: 704 TGIFTPIRELFAATQEARTRGYKPGRFSFNVKGGRCEACQGDGLIKVEMHFLPDVYVPCD 763

Query: 773 ECKGARYNHETLEVKYKGKSISDVLNMSVEEAREHFKNIPQISNKLKTLCDVGLGYIKLG 832
            CK  RYN ETLEV+YKGK+I +VL M+VEEARE F  +P I+ KL+TL +VGL YI LG
Sbjct: 764 SCKSKRYNRETLEVRYKGKNIHEVLEMTVEEAREFFDAVPAIARKLQTLMEVGLSYIGLG 823

Query: 833 QSSTTLSGGEAQRIKLTRELSKRATGNTIYLLDEPTTGLHFHDVKKLIDVLNSLVEKGNT 892
           QS+TTLSGGEAQR+KL +ELSKR TG T+Y+LDEPTTGLHF D++ L+DVL+ L   GNT
Sbjct: 824 QSATTLSGGEAQRVKLAKELSKRDTGKTLYILDEPTTGLHFADIQLLLDVLHRLKAHGNT 883

Query: 893 VVVIEHNLDVIKCADHIIDLGPEGGEFGGEIIATGTPEEIAKCKLSHTGKFLKNIL 948
           +VVIEHNLDVIK AD I+DLGPEGG  GG I+ +GTPE++A+   SHT +FLK +L
Sbjct: 884 IVVIEHNLDVIKTADWIVDLGPEGGSGGGTILVSGTPEQVAEHPSSHTARFLKPLL 939



 Score =  140 bits (353), Expect = 4e-37
 Identities = 73/193 (37%), Positives = 117/193 (60%), Gaps = 15/193 (7%)

Query: 405 CPKCGGKRLKDKALAVKIEDKSIIDLTDLSISKAEEFFNNLKLTDKEYEIAKQVIKEIKS 464
           C  C  KR   + L V+ + K+I ++ ++++ +A EFF+               +  I  
Sbjct: 762 CDSCKSKRYNRETLEVRYKGKNIHEVLEMTVEEAREFFD--------------AVPAIAR 807

Query: 465 RLKFLNDVGLGYLTLSRRSGTLSGGEAQRIRLATQIGSNLTG-VLYVLDEPSIGLHQRDN 523
           +L+ L +VGL Y+ L + + TLSGGEAQR++LA ++    TG  LY+LDEP+ GLH  D 
Sbjct: 808 KLQTLMEVGLSYIGLGQSATTLSGGEAQRVKLAKELSKRDTGKTLYILDEPTTGLHFADI 867

Query: 524 QKLIETLHKLRNLDNTLVVVEHDEDTILNADYVVDMGPGAGVHGGDVVAVGTPMEISKNK 583
           Q L++ LH+L+   NT+VV+EH+ D I  AD++VD+GP  G  GG ++  GTP +++++ 
Sbjct: 868 QLLLDVLHRLKAHGNTIVVIEHNLDVIKTADWIVDLGPEGGSGGGTILVSGTPEQVAEHP 927

Query: 584 DSLTGKYLSGELK 596
            S T ++L   LK
Sbjct: 928 SSHTARFLKPLLK 940