Pairwise Alignments

Query, 951 a.a., excinuclease ABC subunit UvrA from Methanococcus maripaludis S2

Subject, 939 a.a., excinuclease ABC, A subunit from Dechlorosoma suillum PS

 Score = 1015 bits (2624), Expect = 0.0
 Identities = 527/958 (55%), Positives = 691/958 (72%), Gaps = 27/958 (2%)

Query: 1   MKDIIIKGAREHNLKNISLTLPRNNLIVVTGVSGSGKSTIAFDTIYAEGQRRYVESLSAY 60
           M +I I+GAR HNLKNISL LPR+ LIV+TG+SGSGKS++AFDT+YAEGQRRYVESLSAY
Sbjct: 1   MDEIKIRGARTHNLKNISLDLPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAY 60

Query: 61  ARQFLGLMNKPDVDSIEGLSPAIAIQQKTTSKNPRSTVGTVTEIYDYLRLLYARIGIPYC 120
           ARQFL LM KPDVD IEGLSPAI+I+QK TS NPRSTVGTVTEI+DYLRLLYAR G PYC
Sbjct: 61  ARQFLQLMEKPDVDLIEGLSPAISIEQKATSHNPRSTVGTVTEIHDYLRLLYARAGTPYC 120

Query: 121 PEHNIRIESQSPEKIAEKIEEEFSET-VTILSPIVRQKKGTYQKLFKDLNSEGFARIRVN 179
           PEH   +E+Q+  ++ + +     ET + IL+P+V  +KG    LF +L ++GF R+RV+
Sbjct: 121 PEHGEPLEAQTVSQMVDHVLALPEETKLMILAPVVANRKGEQLDLFTELRAQGFVRLRVD 180

Query: 180 GEIYRTDDEITLERYKKHDIEIVIDRLTPKDD-HSRLVEACERALERSGGLLIVTGTKNN 238
           G IY  D+   L + +KH+I++V+DRL  ++D   RL E+ E AL  + G  I    ++N
Sbjct: 181 GTIYEIDNLPKLAKSQKHNIDVVVDRLKVREDMRQRLAESFETALRHADGRAIALEMESN 240

Query: 239 EEIEKIYSSNLACPICGISFEELQPRMFSFNSPFGACEYCSGLGIKMEFDADLIIPDKNK 298
           +E   ++S+  ACPIC  + +EL+PR+FSFN+P GAC  C GLG+   FD   ++   + 
Sbjct: 241 QE--HLFSAKFACPICSYALQELEPRLFSFNNPMGACPKCDGLGVIQFFDPKRVVAHPDL 298

Query: 299 CIADGAVALYRNFLDGYRSQHLAAVANHFGFTVLTPIKDLSKEQLDILMYGSPEK-IHFK 357
            +A GA+  +      Y  Q + ++A ++GF+V TP  +L+ E   +L+YGS +  + F+
Sbjct: 299 SLAAGAIRGWDKRNQFY-FQMIGSLAEYYGFSVDTPFSELTDEVKQVLLYGSDKDLVPFQ 357

Query: 358 VSNGSGDTEWSQNKPWEGLIPQSIRLYNETKSEYRRKELEKFMKVSLCPKCGGKRLKDKA 417
             N  G     ++  +EG+IP   R Y ET S   R+EL K++  + CP C G RL+ +A
Sbjct: 358 YMNERGKLVLKEHA-FEGIIPNLERRYKETDSLAVREELAKYISNTTCPTCEGTRLRQEA 416

Query: 418 LAVKIEDKSIIDLTDLSISKAEEFFNNLKLTDKEYEIAKQVIKEIKSRLKFLNDVGLGYL 477
             VK+  K++ +++ L +++A ++F  ++LT  + ++A++++KEI SRL+FL +VGL YL
Sbjct: 417 RHVKVGSKTLHEISHLPLAEARDYFETIQLTGHKAQVAEKILKEITSRLQFLINVGLDYL 476

Query: 478 TLSRRSGTLSGGEAQRIRLATQIGSNLTGVLYVLDEPSIGLHQRDNQKLIETLHKLRNLD 537
           +L R + TLSGGEAQRIRLA+QIGS LTGV+YVLDEPSIGLHQRDN +L++TL +LR++ 
Sbjct: 477 SLDRSAETLSGGEAQRIRLASQIGSGLTGVMYVLDEPSIGLHQRDNDRLLQTLRQLRDIG 536

Query: 538 NTLVVVEHDEDTILNADYVVDMGPGAGVHGGDVVAVGTPMEISKNKDSLTGKYLSGELKI 597
           NT++VVEHDED I  ADYVVD+GPGAGVHGG +VA GTP +++ N  S+TG YLSG  KI
Sbjct: 537 NTVIVVEHDEDAIRTADYVVDIGPGAGVHGGAIVAEGTPQQVTDNPASMTGDYLSGRKKI 596

Query: 598 EIPKNRRKSD--KFLKLSNCRQNNLKDVSVEIPTGVFNVITGVSGSGKSTLIYENLYPAL 655
           E+PK RR++D  K L++   + NNLKDVS+E+P G+   ITGVSGSGKSTLI + LY A 
Sbjct: 597 EVPKKRRQADPEKKLQVIGAKGNNLKDVSLELPVGLMTCITGVSGSGKSTLINDTLYTAA 656

Query: 656 KEKIKSDESVGELDFEDQLYENTKEKCNLEIN---SEIDKVVVIDQSPIGRTPRSNPATY 712
            +                LY +T E    E        DKV+ +DQSPIGRTPRSNPATY
Sbjct: 657 AK---------------HLYGSTAEPAEHEEIIGLDHFDKVINVDQSPIGRTPRSNPATY 701

Query: 713 TKVFDKIRQVFAETKEAKIKGYGPGRFSFNVKGGRCENCQGDGVIKIEMNFLPDVFVECE 772
           T +   IR++FA   EA+ +GYGPGRFSFNVKGGRCE CQGDGVIK+EM+FLPD++V C+
Sbjct: 702 TGLLTPIRELFAGVPEARSRGYGPGRFSFNVKGGRCEACQGDGVIKVEMHFLPDIYVPCD 761

Query: 773 ECKGARYNHETLEVKYKGKSISDVLNMSVEEAREHFKNIPQISNKLKTLCDVGLGYIKLG 832
            C G RYN ETLEV YKGKSI DVL M+VE+ARE F  +P ++ KL+TL DVGL YI LG
Sbjct: 762 VCHGKRYNRETLEVHYKGKSIYDVLQMTVEQAREFFDPVPVVARKLQTLVDVGLSYITLG 821

Query: 833 QSSTTLSGGEAQRIKLTRELSKRATGNTIYLLDEPTTGLHFHDVKKLIDVLNSLVEKGNT 892
           QS+TTLSGGEAQR+KL  ELSKR TG T+Y+LDEPTTGLHF D++ L+ VL+ L + GNT
Sbjct: 822 QSATTLSGGEAQRVKLALELSKRDTGRTLYILDEPTTGLHFADIEMLLKVLHRLADHGNT 881

Query: 893 VVVIEHNLDVIKCADHIIDLGPEGGEFGGEIIATGTPEEIAKCKLSHTGKFLKNILSK 950
           VVVIEHNLDVIK AD ++DLGPEGG  GG IIA G PE + K   SHTG+FLK +LS+
Sbjct: 882 VVVIEHNLDVIKTADWLVDLGPEGGGGGGRIIAAGAPEAVVKVGESHTGRFLKPLLSR 939