Pairwise Alignments

Query, 951 a.a., excinuclease ABC subunit UvrA from Methanococcus maripaludis S2

Subject, 950 a.a., excinuclease ABC, A subunit (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  996 bits (2574), Expect = 0.0
 Identities = 520/958 (54%), Positives = 694/958 (72%), Gaps = 22/958 (2%)

Query: 1   MKDIIIKGAREHNLKNISLTLPRNNLIVVTGVSGSGKSTIAFDTIYAEGQRRYVESLSAY 60
           M  I I+GAR HNLKNI+LT+PR+ LIV+TG+SGSGKS++AFDT+YAEGQRRYVESLSAY
Sbjct: 1   MDKIEIRGARTHNLKNINLTIPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAY 60

Query: 61  ARQFLGLMNKPDVDSIEGLSPAIAIQQKTTSKNPRSTVGTVTEIYDYLRLLYARIGIPYC 120
           ARQFL LM KPDVD IEGLSPAI+I+QK+TS NPRSTVGT+TEIYDYLRLL+AR+G P C
Sbjct: 61  ARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEIYDYLRLLFARVGEPRC 120

Query: 121 PEHNIRIESQSPEKIAEKIEEEFSET-VTILSPIVRQKKGTYQKLFKDLNSEGFARIRVN 179
           P H   + +Q+  ++ +K+ E   ++ + +L+P+V  +KG + KL + L+++G+ R R++
Sbjct: 121 PTHGQPLAAQTVSQMVDKVLEMPEDSRLMLLAPVVNGRKGEHVKLLEGLSAQGYIRARID 180

Query: 180 GEIYRTDDEITLERYKKHDIEIVIDRLTPKDD-HSRLVEACERALERSGGLLIVTGTKNN 238
           GE+    D  TL+ + KH IE+V+DR   + D   RL E+ E ALE SGG+ +V      
Sbjct: 181 GEVCDLTDPPTLDLHVKHTIEVVVDRFKVRSDIQQRLAESFETALELSGGIAVVASMDEG 240

Query: 239 EEIEKIYSSNLACPICGISFEELQPRMFSFNSPFGACEYCSGLGIKMEFDADLIIPDKNK 298
              E I+S+N ACP CG S  EL+PR+FSFN+P GAC  C GLG++  FD D +I +   
Sbjct: 241 TTEELIFSANFACPHCGYSMAELEPRIFSFNNPAGACPTCDGLGVQQFFDPDRVITNPEL 300

Query: 299 CIADGAVALY--RNFLDGYRSQHLAAVANHFGFTVLTPIKDLSKEQLDILMYGS-PEKIH 355
            +A GA+  +  RNF   Y  Q L+++A+H+ F V  P + LS +   I++YGS  + I 
Sbjct: 301 SLAGGAIRGWDRRNF---YYFQMLSSLADHYKFDVEAPFEQLSDKVRKIVLYGSGKDSIA 357

Query: 356 FKVSNGSGDTEWSQNKPWEGLIPQSIRLYNETKSEYRRKELEKFMKVSLCPKCGGKRLKD 415
           FK  N  GD    +N P+EG++    R Y ET+S   R EL KF+    C  CGG RL++
Sbjct: 358 FKYINDRGDVV-VRNHPFEGILNNMDRRYRETESNAVRDELAKFINTQACQSCGGSRLRE 416

Query: 416 KALAVKIEDKSIIDLTDLSISKAEEFFNNLKLTDKEYEIAKQVIKEIKSRLKFLNDVGLG 475
           +A  V I D ++  LT  SI +A ++F+ L+ T ++ +IA++++KE++ RL FL +VGL 
Sbjct: 417 EARHVFIGDLNLPKLTVWSIGEALDYFDKLEFTGQKAQIAEKILKEVRDRLGFLVNVGLN 476

Query: 476 YLTLSRRSGTLSGGEAQRIRLATQIGSNLTGVLYVLDEPSIGLHQRDNQKLIETLHKLRN 535
           YL+LSR + TLSGGEAQRIRLA+QIG+ L GV+YVLDEPSIGLHQRDN++L++TL  LR+
Sbjct: 477 YLSLSRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLQTLIHLRD 536

Query: 536 LDNTLVVVEHDEDTILNADYVVDMGPGAGVHGGDVVAVGTPMEISKNKDSLTGKYLSGEL 595
           L NT++VVEHDED I  AD+++D+GPGAGVHGG+V+  G   +I    +S+TG+Y+SG+ 
Sbjct: 537 LGNTVIVVEHDEDAIRMADHIIDIGPGAGVHGGEVICDGPIEKIIACDESVTGQYISGKR 596

Query: 596 KIEIPKNRRKSD--KFLKLSNCRQNNLKDVSVEIPTGVFNVITGVSGSGKSTLIYENLYP 653
            I I   R   D  + ++L   R NNL++V + IP G+F  +TGVSGSGKSTLI +  + 
Sbjct: 597 NIHISTPRTPFDPKQVIELYGARGNNLRNVDLTIPIGLFTCVTGVSGSGKSTLINDTFFK 656

Query: 654 ALKEKIKSDESVGELDFEDQLYENTKEKCNLEINSEIDKVVVIDQSPIGRTPRSNPATYT 713
            +  K+ +  +V E    D++     E+C        DKVV IDQSPIGRTPRSNPATYT
Sbjct: 657 -IAHKMLNGATVDEPAPYDRIVG--MEQC--------DKVVDIDQSPIGRTPRSNPATYT 705

Query: 714 KVFDKIRQVFAETKEAKIKGYGPGRFSFNVKGGRCENCQGDGVIKIEMNFLPDVFVECEE 773
            +F  IR++FA T+E++ +GY  GRFSFNVKGGRCE CQGDG+IK+EM+FLPDV+V C+ 
Sbjct: 706 GIFTPIREIFAGTQESRTRGYQVGRFSFNVKGGRCEACQGDGLIKVEMHFLPDVYVPCDA 765

Query: 774 CKGARYNHETLEVKYKGKSISDVLNMSVEEAREHFKNIPQISNKLKTLCDVGLGYIKLGQ 833
           CKG RYN ETLEV+YKGK+I +VL M+VE+ARE F  +P I+ KL+TL DVGL Y++LGQ
Sbjct: 766 CKGKRYNRETLEVRYKGKNIHEVLQMTVEDAREFFDAVPAIARKLQTLMDVGLSYVRLGQ 825

Query: 834 SSTTLSGGEAQRIKLTRELSKRATGNTIYLLDEPTTGLHFHDVKKLIDVLNSLVEKGNTV 893
           S+TTLSGGEAQR+KL +ELSKR TG T+Y+LDEPTTGLHF D++ L+DVL+ L   GNT+
Sbjct: 826 SATTLSGGEAQRVKLAKELSKRDTGKTLYILDEPTTGLHFADIQLLLDVLHRLKSHGNTI 885

Query: 894 VVIEHNLDVIKCADHIIDLGPEGGEFGGEIIATGTPEEIAKCKLSHTGKFLKNILSKN 951
           VVIEHNLDVIK AD IIDLGPEGG  GG I+ATGTPE++A    SHT +FLK +L ++
Sbjct: 886 VVIEHNLDVIKTADWIIDLGPEGGGGGGTILATGTPEDVALHPTSHTARFLKPLLERD 943