Pairwise Alignments

Query, 951 a.a., excinuclease ABC subunit UvrA from Methanococcus maripaludis S2

Subject, 941 a.a., excinuclease ABC subunit A from Klebsiella michiganensis M5al

 Score = 1034 bits (2674), Expect = 0.0
 Identities = 530/955 (55%), Positives = 700/955 (73%), Gaps = 22/955 (2%)

Query: 1   MKDIIIKGAREHNLKNISLTLPRNNLIVVTGVSGSGKSTIAFDTIYAEGQRRYVESLSAY 60
           M  I ++GAR HNLKNI+L +PR+ LIVVTG+SGSGKS++AFDT+YAEGQRRYVESLSAY
Sbjct: 1   MDKIEVRGARTHNLKNINLVIPRDKLIVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAY 60

Query: 61  ARQFLGLMNKPDVDSIEGLSPAIAIQQKTTSKNPRSTVGTVTEIYDYLRLLYARIGIPYC 120
           ARQFL LM KPDVD IEGLSPAI+I+QK+TS NPRSTVGT+TEI+DYLRLLYAR+G P C
Sbjct: 61  ARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEIHDYLRLLYARVGEPRC 120

Query: 121 PEHNIRIESQSPEKIAEKI-EEEFSETVTILSPIVRQKKGTYQKLFKDLNSEGFARIRVN 179
           P+H++ + +Q+  ++ + +  +   + + +L+PI++++KG + K  ++L  +G+ R R++
Sbjct: 121 PDHDVPLAAQTVSQMVDNVLSQPEGQRLMLLAPIIKERKGEHNKTLENLAGQGYIRARID 180

Query: 180 GEIYRTDDEITLERYKKHDIEIVIDRLTPKDDHS-RLVEACERALERSGGLLIVTGTKNN 238
           GE+    D   LE  KKH IE+VIDR   +DD S RL E+ E ALE SGG  IV    + 
Sbjct: 181 GEVCDLSDPPKLELQKKHTIEVVIDRFKVRDDLSTRLAESFETALELSGGTAIVANMDDP 240

Query: 239 EEIEKIYSSNLACPICGISFEELQPRMFSFNSPFGACEYCSGLGIKMEFDADLIIPDKNK 298
           +  E ++S+N ACPICG S  EL+PR+FSFN+P GAC  C GLG++  FD + +I +   
Sbjct: 241 KAEELLFSANFACPICGYSMRELEPRLFSFNNPAGACPTCDGLGVQQYFDPERVIQNPEL 300

Query: 299 CIADGAVALY--RNFLDGYRSQHLAAVANHFGFTVLTPIKDLSKEQLDILMYGS-PEKIH 355
            +A GA+  +  RNF   Y  Q L ++A H+ F V  P   L+     +++YGS  E I 
Sbjct: 301 SLAGGAIRGWDRRNF---YYFQMLKSLAEHYEFDVEAPWGTLNSSVQKVVLYGSGKENIE 357

Query: 356 FKVSNGSGDTEWSQNKPWEGLIPQSIRLYNETKSEYRRKELEKFMKVSLCPKCGGKRLKD 415
           FK  N  GDT   ++ P+EG++    R Y ET+S   R+EL KF+    C  C G RLK 
Sbjct: 358 FKYMNDRGDTSVRRH-PFEGVLHNMERRYKETESSAVREELAKFISNRPCTSCEGTRLKR 416

Query: 416 KALAVKIEDKSIIDLTDLSISKAEEFFNNLKLTDKEYEIAKQVIKEIKSRLKFLNDVGLG 475
           +A  V +E+  +  ++D+SI  A +FFNNLKL+ +  +IA++V+KEI  RLKFL +VGL 
Sbjct: 417 EARHVFVENTPLPTISDMSIGHAMDFFNNLKLSGQRAQIAEKVLKEIGDRLKFLVNVGLN 476

Query: 476 YLTLSRRSGTLSGGEAQRIRLATQIGSNLTGVLYVLDEPSIGLHQRDNQKLIETLHKLRN 535
           YLTLSR + TLSGGEAQRIRLA+QIG+ L GV+YVLDEPSIGLHQRDN++L+ TL  LRN
Sbjct: 477 YLTLSRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLGTLIHLRN 536

Query: 536 LDNTLVVVEHDEDTILNADYVVDMGPGAGVHGGDVVAVGTPMEISKNKDSLTGKYLSGEL 595
           L NT++VVEHDED I  AD+V+D+GPGAGVHGG VVA G   +I    +SLTG+++SG+ 
Sbjct: 537 LGNTVIVVEHDEDAIRAADHVIDIGPGAGVHGGQVVAEGKLEDIMAVPESLTGQFMSGKR 596

Query: 596 KIEIPKNR--RKSDKFLKLSNCRQNNLKDVSVEIPTGVFNVITGVSGSGKSTLIYENLYP 653
           KIE+PK R     +K LKLS  R NNLKDV++ +P G+F  ITGVSGSGKSTLI + L+P
Sbjct: 597 KIEVPKQRVPANPEKVLKLSGARGNNLKDVTLTLPVGLFTCITGVSGSGKSTLINDTLFP 656

Query: 654 ALKEKIKSDESVGELDFEDQLYENTKEKCNLEINSEIDKVVVIDQSPIGRTPRSNPATYT 713
             + ++          + D           ++     DKV+ IDQSPIGRTPRSNPATYT
Sbjct: 657 IAQRQLNGATIAEPAPYRD-----------VQGLEHFDKVIDIDQSPIGRTPRSNPATYT 705

Query: 714 KVFDKIRQVFAETKEAKIKGYGPGRFSFNVKGGRCENCQGDGVIKIEMNFLPDVFVECEE 773
            VF  +R++FA   E++ +GY PGRFSFNV+GGRCE CQGDGVIK+EM+FLPD++V C++
Sbjct: 706 GVFTPVRELFAGVPESRSRGYTPGRFSFNVRGGRCEACQGDGVIKVEMHFLPDIYVPCDQ 765

Query: 774 CKGARYNHETLEVKYKGKSISDVLNMSVEEAREHFKNIPQISNKLKTLCDVGLGYIKLGQ 833
           CKG RYN ETLE+KYKGK+I +VL+M++EEARE F  +P ++ KL+TL DVGL YI+LGQ
Sbjct: 766 CKGKRYNRETLEIKYKGKTIHEVLDMTIEEAREFFDAVPALARKLQTLMDVGLTYIRLGQ 825

Query: 834 SSTTLSGGEAQRIKLTRELSKRATGNTIYLLDEPTTGLHFHDVKKLIDVLNSLVEKGNTV 893
           S+TTLSGGEAQR+KL RELSKR TG T+Y+LDEPTTGLHF D+++L++VL+ L ++GNT+
Sbjct: 826 SATTLSGGEAQRVKLARELSKRGTGQTLYILDEPTTGLHFADIQQLLEVLHQLRDQGNTI 885

Query: 894 VVIEHNLDVIKCADHIIDLGPEGGEFGGEIIATGTPEEIAKCKLSHTGKFLKNIL 948
           VVIEHNLDVIK AD I+DLGPEGG  GGEI+ +GTPE +A+C+ S+T +FLK +L
Sbjct: 886 VVIEHNLDVIKTADWIVDLGPEGGSGGGEILVSGTPETVAECEASYTARFLKPML 940



 Score =  150 bits (379), Expect = 4e-40
 Identities = 78/193 (40%), Positives = 121/193 (62%), Gaps = 15/193 (7%)

Query: 405 CPKCGGKRLKDKALAVKIEDKSIIDLTDLSISKAEEFFNNLKLTDKEYEIAKQVIKEIKS 464
           C +C GKR   + L +K + K+I ++ D++I +A EFF+               +  +  
Sbjct: 763 CDQCKGKRYNRETLEIKYKGKTIHEVLDMTIEEAREFFD--------------AVPALAR 808

Query: 465 RLKFLNDVGLGYLTLSRRSGTLSGGEAQRIRLATQIGSNLTG-VLYVLDEPSIGLHQRDN 523
           +L+ L DVGL Y+ L + + TLSGGEAQR++LA ++    TG  LY+LDEP+ GLH  D 
Sbjct: 809 KLQTLMDVGLTYIRLGQSATTLSGGEAQRVKLARELSKRGTGQTLYILDEPTTGLHFADI 868

Query: 524 QKLIETLHKLRNLDNTLVVVEHDEDTILNADYVVDMGPGAGVHGGDVVAVGTPMEISKNK 583
           Q+L+E LH+LR+  NT+VV+EH+ D I  AD++VD+GP  G  GG+++  GTP  +++ +
Sbjct: 869 QQLLEVLHQLRDQGNTIVVIEHNLDVIKTADWIVDLGPEGGSGGGEILVSGTPETVAECE 928

Query: 584 DSLTGKYLSGELK 596
            S T ++L   LK
Sbjct: 929 ASYTARFLKPMLK 941