Pairwise Alignments

Query, 527 a.a., excinuclease ABC subunit UvrC from Methanococcus maripaludis S2

Subject, 607 a.a., excinuclease ABC, C subunit from Pseudomonas stutzeri RCH2

 Score =  296 bits (757), Expect = 2e-84
 Identities = 179/540 (33%), Positives = 295/540 (54%), Gaps = 37/540 (6%)

Query: 11  PGCYIYKNESGTVIYVGKAKNLKKRVSSYFNKKNHDPKTEKLVKSIYEMEFIVTDNEVEA 70
           PG Y   +    ++YVGKAKNLKKR++SYF K    PKT  LV  I ++E  +T NE EA
Sbjct: 18  PGVYRMFDAQAKLLYVGKAKNLKKRLASYFRKTGQAPKTAALVAKIAQVETTITANETEA 77

Query: 71  LILENTLIKKYSPKYNIDLKDSKNYAYIYISEENFPRIGISRN-KSKKGKFYGPFTSAKE 129
           L+LE TLIK++ P YNI L+D K+Y Y+++S   FPR+ I R  K + G+++GP+ SA  
Sbjct: 78  LLLEQTLIKQWRPPYNILLRDDKSYPYVFLSAGEFPRLSIHRGAKKEPGRYFGPYPSAGA 137

Query: 130 RDYVLDVLKKTFKIRSCKNMH----KRPCLRHHIKNCTAPCSGDITSKDYLNQIKKAEHI 185
               L +L+K F +R C++ +     RPCL++ IK C APC   +   +Y   ++ +   
Sbjct: 138 IRESLSLLQKAFFVRQCEDSYYRNRTRPCLQYQIKRCKAPCVNLVEPAEYAEDVRHSVMF 197

Query: 186 LKGNIDSLIHELKNEMNEKSKNLQFEEALLIREEINAIERLKTRQNVKRDVKYNEDVISI 245
           L+G  ++L  EL   M + + +L FE A  IR++I  + R++ +Q+++     + D+++ 
Sbjct: 198 LEGRSNALAEELSRNMEKAAMSLDFERAAEIRDQIGILRRVQDQQSMEGGTG-DVDIVAA 256

Query: 246 LEKSGKLHIMVFNVLKGTLFDRKYF-----EFDYTENFFEEFLIQYY---SENDVPSEII 297
           +   G   + +  V  G +   K F       +      + FL QYY   +E D+P+E+I
Sbjct: 257 VVSPGGACVHLITVRGGRVLGSKNFFPQVAIEESVSEVLQAFLEQYYLGAAERDLPAELI 316

Query: 298 ISELPKNLEEDNNEYSSDALLEYLSKKKGSKVAFKIPKQGEKKQLLDLAIKNLEIYVNGN 357
           ++ + ++            L++ +S+ +G ++      +G + +   LA+ N E  +   
Sbjct: 317 VNAVHEDFA---------TLIDAISELRGVELTITHRVRGTRARWQQLALTNAEQAMGAR 367

Query: 358 -------EIKVQSLKNKLMLDKSPNIIECFDISHLSGTSTVGSVVQFRNGKPDKKNYRRF 410
                    + ++L   L LD+ P  +ECFDISH SG +TV S V F    P K +YRR+
Sbjct: 368 LANRQHLSARFEALAEALELDEPPQRLECFDISHSSGEATVASCVVFGPEGPLKSDYRRY 427

Query: 411 KIKTVSGIDDFKSISEVVFRRYSKLLEENLELPDLIIIDGGKGQLSSAFSELRKLKL-KI 469
            I+ V+  DD+ ++ + + RR+ K  E   +LPD++++DGGKGQL+ A   L +L + ++
Sbjct: 428 NIEGVTAGDDYAAMHQALSRRFRKAAEGEGKLPDILLVDGGKGQLNMAREVLEELAVPEL 487

Query: 470 PLISIAKRE------EEIYTPGIENPLPIKKNEKASLFIQEIRDEAHRFAINYNRLLRKK 523
            L+ +AK        E +Y     +   +  +  A   IQ++RDEAHRFAI  +R  R K
Sbjct: 488 ILLGVAKGVTRKPGLETLYLNDAAHEFTLPADSPALHLIQQVRDEAHRFAITGHRARRGK 547