Pairwise Alignments

Query, 527 a.a., excinuclease ABC subunit UvrC from Methanococcus maripaludis S2

Subject, 643 a.a., excinuclease ABC subunit C from Synechococcus elongatus PCC 7942

 Score =  281 bits (719), Expect = 5e-80
 Identities = 181/573 (31%), Positives = 299/573 (52%), Gaps = 61/573 (10%)

Query: 4   ISDIPKNPGCYIYKNESGTVIYVGKAKNLKKRVSSYFNKKNH-DPKTEKLVKSIYEMEFI 62
           + ++P  PG Y  ++ S  ++Y+GK+K L+ RV SYF      +P+   +V+ + E+E I
Sbjct: 20  LRELPAEPGVYFMRDASDRILYIGKSKKLRSRVRSYFRDLERLNPRINLMVRQVCEIEII 79

Query: 63  VTDNEVEALILENTLIKKYSPKYNIDLKDSKNYAYIYIS-EENFPRIGISRNK---SKKG 118
           VTD E EAL LE  LIK++ P +N+ LKD K Y Y+ I+  +++PRI I+R +   + + 
Sbjct: 80  VTDTEAEALALEANLIKQHQPHFNVLLKDDKKYPYLCITWSDDYPRIFITRKRRLGNSRD 139

Query: 119 KFYGPFTSAKERDYVLDVLKKTFKIRSCKN--MHKRPCLRHHIKNCTAPCSGDITSKDYL 176
           ++YGP+   +   + L ++K+ F +R         R CL + I  C   C   I   DY 
Sbjct: 140 RYYGPYVDTRLLRHTLFLVKRLFPLRQRPQPLFKDRTCLNYDIGRCPGVCQSLIRPDDYR 199

Query: 177 NQIKKAEHILKGNIDSLIHELKNEMNEKSKNLQFEEALLIREEINAIERLKTRQNVK-RD 235
             ++K   I +G    L+  L+ +M + ++NL+FE+A  IR++I  +E L   Q V+  D
Sbjct: 200 KTLQKVAMIFQGRSSELVELLEAQMLQAAENLEFEKAAKIRDQIRGLEGLGAEQKVQLPD 259

Query: 236 VKYNEDVISILEKSGKLHIMVFNVLKGTLFDRKYFEFDYTEN----FFEEFLIQYYSEND 291
            + + D I++        I +F +  G L  R  F  D          +  L ++Y+  D
Sbjct: 260 DRISRDAIALAMDEQHACIQLFQIRAGKLVGRLGFVADAQSGSAAAIAQRVLEEHYASVD 319

Query: 292 ---VPSEIIIS-ELPKNLEEDNNEYSSDALLEYLSKKKGSKVAFKIPKQGEKKQLLDLAI 347
              +P E+++  +LP+          ++ L  +LS+++G KV    P++  K  L+ +  
Sbjct: 320 SVEIPQEVLVQHDLPE----------AELLEVWLSERRGRKVEILSPQRQIKADLIAMVE 369

Query: 348 KNLEIYVNGNEIKVQ-------SLKNKLMLDKSPNIIECFDISHLSGTSTVGSVVQFRNG 400
           +N E  +   +   +        L + L L + P  IE +DISH+ G+  V S V F +G
Sbjct: 370 RNAEYELARTQQSAERHTASLIDLADLLDLPELPRRIEGYDISHIQGSDAVASQVVFIDG 429

Query: 401 KPDKKNYRRFKIKT----VSGIDDFKSISEVVFRRYSKLLE-----ENL----------- 440
            P K++YRR+KI+         DDF S++EV+ RR+ K  E     E+L           
Sbjct: 430 LPAKQHYRRYKIRNPEVRAGHSDDFASLAEVLHRRFRKFAEAKARGESLAPSEQRQGSLL 489

Query: 441 ------ELPDLIIIDGGKGQLSSAFSELRKLKL--KIPLISIAKREEEIYTPGIENPLPI 492
                 + PDL++IDGGKGQLS+    LR L L   + L S+AK+ EEI+ PG  +PLP 
Sbjct: 490 RPDDLADFPDLVMIDGGKGQLSAVVEVLRNLNLLEDVKLCSLAKKREEIFLPGASDPLPT 549

Query: 493 KKNEKASLFIQEIRDEAHRFAINYNRLLRKKEL 525
              +     ++ +RDEAHRFA++++R  R + +
Sbjct: 550 DAEQPGVQLLRRLRDEAHRFAVSFHRQKRTERM 582