Pairwise Alignments

Query, 527 a.a., excinuclease ABC subunit UvrC from Methanococcus maripaludis S2

Subject, 674 a.a., excinuclease ABC subunit C from Sinorhizobium meliloti 1021

 Score =  278 bits (712), Expect = 4e-79
 Identities = 183/568 (32%), Positives = 305/568 (53%), Gaps = 55/568 (9%)

Query: 4   ISDIPKNPGCYIYKNESGTVIYVGKAKNLKKRVSSYFNKKNHDPKTEKLVKSIYEMEFIV 63
           +  +P  PG Y   NE+G V+YVGKA++LKKRVS+Y   + H  +  ++V+    MEF+ 
Sbjct: 59  VKRLPNGPGVYRMLNEAGDVLYVGKARSLKKRVSNYAQGRGHSNRIARMVRETAHMEFVT 118

Query: 64  TDNEVEALILENTLIKKYSPKYNIDLKDSKNYAYIYIS-EENFPRIGISRN-KSKKGKFY 121
           T  E+EAL+LE  LIK+  P++N+ L+D K++ YI ++ +   P +   R  +S+KG ++
Sbjct: 119 TRTEIEALLLEANLIKRLRPRFNVLLRDDKSFPYIVVTGDTRAPALYKHRGARSRKGDYF 178

Query: 122 GPFTSAKERDYVLDVLKKTFKIRSCKN----MHKRPCLRHHIKNCTAPCSGDITSKDYLN 177
           GPF SA      ++ L++ F +R+C +       RPCL + IK C+APC+ +++  DY  
Sbjct: 179 GPFASAGAVGRTINSLQRAFLLRTCTDSVFETRTRPCLLYQIKRCSAPCTNEVSDADYAE 238

Query: 178 QIKKAEHILKGNIDSLIHELKNEMNEKSKNLQFEEALLIREEINAIERLKTRQNVKRDVK 237
            + +A+  L G   ++   + + M E S+NL FE A L R+ + A+  +++ Q +     
Sbjct: 239 LVSEAKDFLSGKSQAVKATIASAMAEASENLDFERAALYRDRLAALSHVQSHQGINPAGV 298

Query: 238 YNEDVISILEKSGKLHIMVFNVLKGTLF-DRKYF-EFDYT---ENFFEEFLIQYYSENDV 292
              DV +   + G   I VF    G  + +R YF + D +         FL Q+Y +   
Sbjct: 299 EEADVFATHHEGGISCIQVFFFRTGQNWGNRAYFPKADPSIPPAEVLSAFLAQFYDDKPC 358

Query: 293 PSEIIISELPKNLEEDNNEYSSDALLEYLSKKKGSKVAFKIPKQGEKKQLLDLAIKNLEI 352
           P +++   L   +EE       + L + LS+K G KV+  +P++GEKK L++ A+ N   
Sbjct: 359 PRQVL---LCAPVEE------QELLAQALSEKSGYKVSILVPQRGEKKDLVEHALANAR- 408

Query: 353 YVNGNEIKVQSLKNKLM--------LDKSPNIIECFDISHLSGTSTVGSVVQFRNGKPDK 404
             +G ++   + + +L+        L   P  IE +D SH+ GT+ VG +V        K
Sbjct: 409 EAHGRKLAETASQGRLLEGFAATFQLPYVPRRIEIYDNSHIMGTNAVGGMVVAGPEGFVK 468

Query: 405 KNYRRFKIKT--VSGIDDFKSISEVVFRRYSKLLEENLE---------------LPDLII 447
             YR+F IK+  ++  DDF  + EV+ RR+S+LL+E  +                PD+I+
Sbjct: 469 GQYRKFNIKSTDITPGDDFGMMREVMTRRFSRLLKEEGKPDRSAEPGEDAGFPAWPDVIL 528

Query: 448 IDGGKGQLSSAFSELRKLKLK--IPLISIAK------REEEIYTPGIENPLPIKKNEKAS 499
           IDGG+GQ+++  + L++L ++  +  I +AK        E  +  G E+   +   +   
Sbjct: 529 IDGGQGQMTAVRTILKELGIEDCVTAIGVAKGVDRDAGRERFFAEGRES-FTLPPRDPVL 587

Query: 500 LFIQEIRDEAHRFAINYNRLLRKKELIK 527
            FIQ +RDEAHRFAI  +R  RKKE++K
Sbjct: 588 YFIQRLRDEAHRFAIGSHRARRKKEMVK 615