Pairwise Alignments

Query, 527 a.a., excinuclease ABC subunit UvrC from Methanococcus maripaludis S2

Subject, 606 a.a., excinuclease ABC subunit C (RefSeq) from Shewanella amazonensis SB2B

 Score =  271 bits (694), Expect = 4e-77
 Identities = 182/546 (33%), Positives = 292/546 (53%), Gaps = 48/546 (8%)

Query: 12  GCYIYKNESGTVIYVGKAKNLKKRVSSYFNKKNHDPKTEKLVKSIYEMEFIVTDNEVEAL 71
           G Y   + +  VIYVGKAK+LKKR+SSYF     + KT+ LV +I  ++  +T +E EAL
Sbjct: 16  GVYRMYDAAAEVIYVGKAKDLKKRLSSYFRTNLPNIKTQALVSNIANIDVTLTHSETEAL 75

Query: 72  ILENTLIKKYSPKYNIDLKDSKNYAYIYISEENFPRIGISRN-KSKKGKFYGPFTSAKER 130
           ILEN  IK+Y PKYN+ L+D K+Y YI +S    PR+   R  + +KG+++GP+ +    
Sbjct: 76  ILENDYIKQYMPKYNVLLRDDKSYPYILLSGHKHPRLAYHRGAQREKGEYFGPYPNGGAV 135

Query: 131 DYVLDVLKKTFKIRSCKNMH----KRPCLRHHIKNCTAPCSGDITSKDYLNQIKKAEHIL 186
              L++++K F IR C++ +     RPCL++ I  C+APC G I+ +DY  Q++ A   L
Sbjct: 136 RESLNLMQKLFPIRQCEDAYYRARSRPCLQYQIGRCSAPCVGKISDEDYDEQVRLATLFL 195

Query: 187 KGNIDSLIHELKNEMNEKSKNLQFEEALLIREEINAIERLKTRQNVKRDVKYNEDVISIL 246
           +G    +I  L  +M   +  +++E A   R++I A+ ++  +QNV    + + DVI + 
Sbjct: 196 RGKDQQVIASLVGKMEAAALAMEYEAAARYRDQIQALRKVAEQQNVSGQ-QGDMDVIGVN 254

Query: 247 EKSGKLHIMVFNVLKGTLF-DRKYFEF--DYTE--NFFEEFLIQYYSEND----VPSEII 297
             SG     +  + +G +F  R YF    D TE       F++Q+Y  N+    +P E++
Sbjct: 255 YASGIACFHILFIREGKIFGSRSYFPAVPDATELGEVLRAFMLQFYLGNEAHRSIPKEVL 314

Query: 298 ISELPKNLEEDNNEYSSDALLEYLSKKKGSKVAFKIPKQGEKKQLLDLAIKNLE------ 351
           + E  ++L E         L   +    G ++  K   + ++   L LA  N        
Sbjct: 315 LGEEFEDLHE---------LEAAMQDSLGHRLEIKTKVRADRAAFLRLANTNAANAVVTK 365

Query: 352 -IYVNGNEIKVQSLKNKLMLDKSPNIIECFDISHLSGTSTVGSVVQFRNGKPDKKNYRRF 410
             + +  E +++ L+  L L      +ECFDISH  G STV S V F    P+K  YRR+
Sbjct: 366 LAHKSTVEQRMELLEEVLGLGAPIQRMECFDISHTMGESTVASCVVFNREGPNKGEYRRY 425

Query: 411 KIKTVSGIDDFKSISEVVFRRYSKLLEENLELPDLIIIDGGKGQLSSA-------FSELR 463
            I  ++G DD+ ++++ + RR+ K +E   ++PD++ IDGG GQL +A       F+EL 
Sbjct: 426 NISGITGGDDYAAMAQALSRRFDK-IERTGKVPDVLFIDGGLGQLRAAMTIVNDKFAELD 484

Query: 464 KLKLKIPLISIAKRE------EEIYTPGIENPLPIKKNEKASLFIQEIRDEAHRFAINYN 517
           +  L   L+ +AK E      E +   G E    ++ +  A   IQ IRDE+HRFAI  +
Sbjct: 485 RQPL---LVGVAKGESRKPGLETLIFGGSEAEFSLESDNPALHLIQHIRDESHRFAITGH 541

Query: 518 RLLRKK 523
           R  R++
Sbjct: 542 RAKRQQ 547