Pairwise Alignments

Query, 527 a.a., excinuclease ABC subunit UvrC from Methanococcus maripaludis S2

Subject, 639 a.a., Excinuclease ABC, C subunit (NCBI) from Rhodospirillum rubrum S1H

 Score =  268 bits (686), Expect = 3e-76
 Identities = 177/553 (32%), Positives = 293/553 (52%), Gaps = 46/553 (8%)

Query: 7   IPKNPGCYIYKNESGTVIYVGKAKNLKKRVSSYFNKKNHDPKTEKLVKSIYEMEFIVTDN 66
           +P +PG Y   +  G V+YVGKA+NLK+RV +Y        + ++++ +   ME + T  
Sbjct: 40  MPSSPGVYRMIDGKGDVLYVGKARNLKRRVINYTQPHRLPVRIQRMIAATLTMEVLTTHT 99

Query: 67  EVEALILENTLIKKYSPKYNIDLKDSKNYAYIYI-SEENFPRIGISRNKSKK-GKFYGPF 124
           E EAL+LE+ LIKK  P+YNI L+D K++ YI I S+  FPRI   R   +K G+++GPF
Sbjct: 100 EAEALLLESNLIKKLKPRYNILLRDDKSFPYIEITSDHAFPRIVKFRGTLRKGGEYFGPF 159

Query: 125 TSAKERDYVLDVLKKTFKIRSCKN----MHKRPCLRHHIKNCTAPCSGDITSKDYLNQIK 180
            SA      L  L+KTF +R+C +       RPCL   IK C APC   +   DY   ++
Sbjct: 160 ASAGAVTSTLTALQKTFLLRTCADNVFASRSRPCLLFQIKRCAAPCVDRVAEADYKALVE 219

Query: 181 KAEHILKGNIDSLIHELKNEMNEKSKNLQFEEALLIREEINAIERLKTRQNVKRDVKYNE 240
           +A   L G+  +L H+L   M+E ++ L +E+A + R+ I A+  +++ Q++        
Sbjct: 220 EARAFLSGSSKALQHDLAKRMDEAAQALDYEQAAIFRDRIKALTNVQSHQDINLPTLGEA 279

Query: 241 DVISILEKSGKLHIMVFNVLKG-TLFDRKYFEF----DYTENFFEEFLIQYYSENDVPSE 295
           DVI+  +  G+  + VF    G    +R +F      +      E FL Q+Y+    P E
Sbjct: 280 DVIACHQAGGQTCVQVFFFRGGRNNGNRSFFPAHAGDEGLPEVLEAFLGQFYAGFPPPRE 339

Query: 296 I-IISELPKNLEEDNNEYSSDALLEYLSKKKGSKVAFKIPKQGEKKQLLDLAIKNLEIYV 354
           I +++++P +          D + + L  + G +V   +P++G +++L+D A+ N    +
Sbjct: 340 ILLLTDIPHH----------DLVEQALCLRAGHRVRLVVPRRGSRRKLIDHALANAREAL 389

Query: 355 NGNEIKVQSLKNKLM--------LDKSPNIIECFDISHLSGTSTVGSVVQFRNGKPDKKN 406
            G  +   S +  L+        LD     +E +D SH+SGT  VG +V        K  
Sbjct: 390 -GRRLAESSAQRTLLEGTAVAFGLDGPLQRVEIYDNSHISGTHAVGGMVVAGPEGFMKAA 448

Query: 407 YRRFKIKT--VSGIDDFKSISEVVFRRYSKLLEENL-----ELPDLIIIDGGKGQLSSAF 459
           YR+F I++  ++  DD+  + EV+ RR+++  +E+      + PDL++IDGG GQL++  
Sbjct: 449 YRKFNIRSPDITPGDDYAMMREVMIRRFARARKEDPDRDRGQWPDLVLIDGGLGQLNAVR 508

Query: 460 SELRKLKLK-IPLISIAK------REEEIYTPGIENPLPIKKNEKASLFIQEIRDEAHRF 512
             L ++ ++ +PL+ +AK        E  + PG   P  ++ N+    FIQ +RDEAHRF
Sbjct: 509 EALAEIGVEDVPLVGVAKGPDRDAGRERFFVPG-RPPFMLRHNDPVLYFIQRLRDEAHRF 567

Query: 513 AINYNRLLRKKEL 525
           AI  +R  R K +
Sbjct: 568 AIGSHRTRRSKAI 580