Pairwise Alignments

Query, 527 a.a., excinuclease ABC subunit UvrC from Methanococcus maripaludis S2

Subject, 616 a.a., excinuclease ABC, C subunit from Dechlorosoma suillum PS

 Score =  298 bits (763), Expect = 4e-85
 Identities = 181/537 (33%), Positives = 286/537 (53%), Gaps = 34/537 (6%)

Query: 11  PGCYIYKNESGTVIYVGKAKNLKKRVSSYFNKKNHDPKTEKLVKSIYEMEFIVTDNEVEA 70
           PG Y   +  G V+YVGKAKNLKKRVSSYF +    P+   +V  I  ++  VT +E EA
Sbjct: 32  PGVYRMLDAEGKVLYVGKAKNLKKRVSSYFQRTVSSPRIALMVSRICGIDTTVTRSEAEA 91

Query: 71  LILENTLIKKYSPKYNIDLKDSKNYAYIYISEENFPRIGISRN-KSKKGKFYGPFTSAKE 129
           L+LEN LIK   P +NI  +D K+Y Y+ ++ + FPR+   R    +K  +YGPF +A  
Sbjct: 92  LLLENNLIKSLDPPFNILFRDDKSYPYVQLTRDQFPRLAFFRGAPDRKADYYGPFPAASV 151

Query: 130 RDYVLDVLKKTFKIRSCKNM----HKRPCLRHHIKNCTAPCSGDITSKDYLNQIKKAEHI 185
               + +L+KTF +R+C++       RPCL + I  C+ PC G I+++DY   ++ A   
Sbjct: 152 VRDSIHLLQKTFHLRTCEDSVFANRSRPCLLYQIHRCSGPCVGLISAEDYAKDVQLAAMF 211

Query: 186 LKGNIDSLIHELKNEMNEKSKNLQFEEALLIREEINAIERLKTRQNVKRDVKYNEDVISI 245
           LKG    +I  L   M + S  L FE+A ++R+ I  + R++ +Q V      + DV+  
Sbjct: 212 LKGKQHEVIQRLTEAMEQASMALAFEQAAVLRDRIQGLRRIQEKQYVDSGRDEDADVVVA 271

Query: 246 LEKSGKLHIMVFNVLKGT-LFDRKYFEFDYTE----NFFEEFLIQYYSENDVPSEIIISE 300
           +++SG L + +  +  G  L D+  F  +  +         FL Q+Y E+ +P+ I+++ 
Sbjct: 272 VQESGMLCLNLAMIRGGQHLGDKPLFPKNAADCEPAEAIAAFLDQHYREHPIPARILVNV 331

Query: 301 LPKNLEEDNNEYSSDALLEYLSKKKGSKVAFKIPKQGEKKQLLDLAIKNLEIYVNGNEI- 359
            P          + +   E L+      V  + P+Q   +  +++A++N  I +      
Sbjct: 332 PP----------ADEEAAESLAALAERPVPIQEPRQTAHRMWVEMAVQNARIAIASRRAT 381

Query: 360 ------KVQSLKNKLMLDKSPNIIECFDISHLSGTSTVGSVVQFRNGKPDKKNYRRFKIK 413
                 ++++L+  L L + P  IECFDISH  G +TV S V ++     K  YRR+ I+
Sbjct: 382 LSMQGQRLEALQEALGLAELPQRIECFDISHTQGEATVASCVVYQGNGMRKSEYRRYNIR 441

Query: 414 TVSGIDDFKSISEVVFRRYSKLLEENLELPDLIIIDGGKGQLSSAFSELRKLKL-KIPLI 472
            +   DD+ ++ + V RRY K+       PDLI+IDGGKGQ+  A+S L +L L  +P+I
Sbjct: 442 DIQKGDDYAAMRQAVSRRYDKVAVGEGVCPDLILIDGGKGQVGVAYSALEELGLAHVPMI 501

Query: 473 SIAKRE------EEIYTPGIENPLPIKKNEKASLFIQEIRDEAHRFAINYNRLLRKK 523
            +AK        E++  P    PL +     A   IQEIRDE+HRFA++ +R  R K
Sbjct: 502 GVAKGVERKVGLEQLIFPDGRKPLQLPSTHPALHLIQEIRDESHRFAVSGHRAQRGK 558