Pairwise Alignments

Query, 646 a.a., excinuclease ABC subunit UvrB from Methanococcus maripaludis S2

Subject, 1149 a.a., Transcription-repair coupling factor from Pseudomonas fluorescens FW300-N2E2

 Score = 59.3 bits (142), Expect = 9e-13
 Identities = 51/225 (22%), Positives = 93/225 (41%), Gaps = 22/225 (9%)

Query: 37  KQTLLGVTGSGKTFTIANVIEKVQKPTLVIAHNKTLAAQLYNEFKEFFPENRVEYFVSY- 95
           KQ    + G+  +  IA      ++ TL++  +   A +L  E   F P+  V +F  + 
Sbjct: 15  KQHWGNLPGAALSLAIAEAASAAKRFTLLLTADSQSAERLEQELSFFAPDLPVLHFPDWE 74

Query: 96  ---YDYYQPESYIPQKDQYIEKDAQINPKIEQM-RLRATSAILSRRDVIIVASVSCIYGL 151
              YD + P   I            I+ +I  + RL   S       V++V   + ++ L
Sbjct: 75  TLPYDLFSPHQDI------------ISQRIASLYRLPELS-----HGVLVVPITTALHRL 117

Query: 152 GNPELFKEMGFELKVGEKIKRSDIIEKLVDIQYERNDMELVPGRFRVKGDTLDIIPGYQD 211
              +        L +G+K+    +  +L    Y   D     G F V+G  +D+ P    
Sbjct: 118 APTQFLLGSSLVLDIGQKLDVEQMRTRLEASGYRCVDTVYEHGEFAVRGALIDLFPMGSK 177

Query: 212 DILRVEMFGDEIDRIYELDPKNMSKKHEIDSFYMYPAKHFVIPEE 256
              R+++F DEI+ +   DP+N     ++ S  + PAK F + ++
Sbjct: 178 LPYRIDLFDDEIETLRTFDPENQRSIDKVQSIRLLPAKEFPLQKD 222



 Score = 36.2 bits (82), Expect = 9e-06
 Identities = 35/146 (23%), Positives = 61/146 (41%), Gaps = 38/146 (26%)

Query: 449 TTLTKRLAEELTEYLAKRNVKARYLHSDIDTIER-----TEIIRNLRLG----------- 492
           +T+ + L  EL      R  +  YLH+D+ TIE+      E++   R+G           
Sbjct: 798 STVKEALLRELL-----RGGQVYYLHNDVKTIEKCAADLAELVPEARIGIGHGQMREREL 852

Query: 493 ----------KFDCLVGINLLREGLDIPEVGFVGILDADKEGFLRNDKSLIQTIGRAARN 542
                     +F+ L+   ++  G+D+P    + I  ADK G  +    L Q  GR  R+
Sbjct: 853 EQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQ----LHQLRGRVGRS 908

Query: 543 ANSKVVLYAGKMTDSIKKAVSETERR 568
            +     YA  +T   ++   + E+R
Sbjct: 909 HHQ---AYAYLLTPPRQQITPDAEKR 931