Pairwise Alignments

Query, 646 a.a., excinuclease ABC subunit UvrB from Methanococcus maripaludis S2

Subject, 671 a.a., Excinuclease ABC subunit B from Pseudomonas fluorescens FW300-N1B4

 Score =  674 bits (1738), Expect = 0.0
 Identities = 348/672 (51%), Positives = 461/672 (68%), Gaps = 37/672 (5%)

Query: 5   DFKLKAEFKPKGSQLEAIAGLVKDLEKNPEKSKQTLLGVTGSGKTFTIANVIEKVQKPTL 64
           +F+L   F+P G Q EAI  +V+ +E     + QTLLGVTGSGKTF+IANVI ++Q+PTL
Sbjct: 3   EFQLVTRFEPAGDQPEAIRLMVEGIEAG--LAHQTLLGVTGSGKTFSIANVIAQIQRPTL 60

Query: 65  VIAHNKTLAAQLYNEFKEFFPENRVEYFVSYYDYYQPESYIPQKDQYIEKDAQINPKIEQ 124
           V+A NKTLAAQLY EFK FFP N VEYFVSYYDYYQPE+Y+P  D +IEKDA IN  IEQ
Sbjct: 61  VLAPNKTLAAQLYGEFKTFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQ 120

Query: 125 MRLRATSAILSRRDVIIVASVSCIYGLGNPELFKEMGFELKVGEKIKRSDIIEKLVDIQY 184
           MRL AT A+L R+D IIV +VSCIYGLG+PE + +M   +  G+K+ +  ++ +L D+QY
Sbjct: 121 MRLSATKALLERKDAIIVTTVSCIYGLGSPETYLKMVLHVDRGDKLDQRALLRRLADLQY 180

Query: 185 ERNDMELVPGRFRVKGDTLDIIPGYQD-DILRVEMFGDEIDRIYELDPKNMSKKHEIDSF 243
            RNDM+     FRV+GD +DI P   D + +R+E+F DE++ +   DP       ++  F
Sbjct: 181 TRNDMDFARATFRVRGDVIDIHPAESDFEAIRIELFDDEVESLSAFDPLTGEVIRKLPRF 240

Query: 244 YMYPAKHFVIPEEDKKNAINSILKELDEWLP----NLDMLKSHRLKQKTLYDIEMIEETG 299
             YP  H+V P E    A   I  EL E L     N  ++++ RL+Q+T +D+EMI E G
Sbjct: 241 TFYPKSHYVTPRETLLEATEGIKVELQERLEYLRSNNKLVEAQRLEQRTRFDLEMILELG 300

Query: 300 SCKGIENYSRHFENRKEGEPAYCLLDYFPEDFLIVIDESHQTIPQIRGMYKGDRSRKQSL 359
            C GIENYSR+   R+ G+    L DY P D L+VIDESH ++PQ+  MYKGDRSRK++L
Sbjct: 301 YCNGIENYSRYLSGRESGQAPPTLFDYLPADALLVIDESHVSVPQVGAMYKGDRSRKETL 360

Query: 360 IDYGFRLPSAYDNRPLKFEEFKKYMNNVIFVSATPGEYELDNSNQVVEQIIRPTGLLDPE 419
           ++YGFRLPSA DNRP++F+EF+      IFVSATPG YE +++ +VVEQ++RPTGL+DP+
Sbjct: 361 VEYGFRLPSALDNRPMRFDEFESISPQTIFVSATPGNYEAEHAGRVVEQLVRPTGLVDPQ 420

Query: 420 VEIRPIENQVEDIIKETEKMVEKGERVLITTLTKRLAEELTEYLAKRNVKARYLHSDIDT 479
           +EIRP   QV+D++ E  K V   ERVL+TTLTKR++E+LT+YLA   V+ RYLHSDIDT
Sbjct: 421 IEIRPALTQVDDLLSEITKRVALEERVLVTTLTKRMSEDLTDYLADHGVRVRYLHSDIDT 480

Query: 480 IERTEIIRNLRLGKFDCLVGINLLREGLDIPEVGFVGILDADKEGFLRNDKSLIQTIGRA 539
           +ER EIIR+LRLG FD LVGINLLREGLD+PEV  V ILDADKEGFLR+++SLIQTIGRA
Sbjct: 481 VERVEIIRDLRLGVFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA 540

Query: 540 ARNANSKVVLYAGKMTDSIKKAVSETERRRKLQKEHNEKHNITPQTIVKPIREKVVDISD 599
           ARN N + +LYA ++T S+++A+ ETERRR  Q   N  + ITP+ + K     V DI +
Sbjct: 541 ARNLNGRAILYADRITGSMERAIGETERRRDKQIAFNLANGITPKGVFK----DVADIME 596

Query: 600 VKHIP--------------------------VADIPNVIVELEAEMYEAAEALEFEKAIK 633
              +P                           ++I   I +LE +MY+ A  LEFE A +
Sbjct: 597 GAVVPGSRSKKRKGMAKAAEESAKYEAELRSPSEISKRIRQLEEKMYQLARDLEFEAAAQ 656

Query: 634 IRDTIAKLKKKI 645
           +RD I KL++++
Sbjct: 657 LRDEIGKLRERL 668