Pairwise Alignments

Query, 646 a.a., excinuclease ABC subunit UvrB from Methanococcus maripaludis S2

Subject, 1148 a.a., transcription-repair coupling factor (mfd) from Pseudomonas stutzeri RCH2

 Score = 57.0 bits (136), Expect = 5e-12
 Identities = 51/224 (22%), Positives = 91/224 (40%), Gaps = 20/224 (8%)

Query: 37  KQTLLGVTGSGKTFTIANVIEKVQKPTLVIAHNKTLAAQLYNEFKEFFPENRVEYFVSY- 95
           KQ    + G+  +  IA      ++ TL++  +   A +L  E   F P   V +F  + 
Sbjct: 15  KQHWGNLPGAALSLAIAEAASNAKRFTLLLTADSQSAERLQEELAFFAPGLPVLHFPDWE 74

Query: 96  ---YDYYQPESYIPQKDQYIEKDAQINPKIEQMRLRATSAILSRRDVIIVASVSCIYGLG 152
              YD + P   I    Q I    Q+ P++                V++V   + ++ L 
Sbjct: 75  TLPYDIFSPHQDIVS--QRISALYQL-PELSH-------------GVLVVPITTALHRLA 118

Query: 153 NPELFKEMGFELKVGEKIKRSDIIEKLVDIQYERNDMELVPGRFRVKGDTLDIIPGYQDD 212
                      L VG+K+    +  +L    Y   D     G F V+G  +D+ P     
Sbjct: 119 PKRFLLGSSLVLDVGQKLDVEQMRLRLEAAGYRCVDTVYEHGEFAVRGALIDLFPMGSPL 178

Query: 213 ILRVEMFGDEIDRIYELDPKNMSKKHEIDSFYMYPAKHFVIPEE 256
             R+++F DEI+ +   DP+N     +++S  + PA+ F + +E
Sbjct: 179 PYRIDLFDDEIETLRTFDPENQRSIDKVESIRLLPAREFPLKKE 222



 Score = 33.1 bits (74), Expect = 7e-05
 Identities = 33/146 (22%), Positives = 58/146 (39%), Gaps = 38/146 (26%)

Query: 449 TTLTKRLAEELTEYLAKRNVKARYLHSDIDTIERT------------------------- 483
           T + + L  EL      R  +  YLH+D+ TIE+                          
Sbjct: 795 TVIKEALLRELL-----RGGQVYYLHNDVKTIEKCAADLQALVPEARVAIGHGQMRERDL 849

Query: 484 -EIIRNLRLGKFDCLVGINLLREGLDIPEVGFVGILDADKEGFLRNDKSLIQTIGRAARN 542
            +++ +    +F+ LV   ++  G+D+P    + I  ADK G  +    L Q  GR  R+
Sbjct: 850 EQVMSDFYHKRFNVLVASTIIETGIDVPSANTIIIERADKFGLAQ----LHQLRGRVGRS 905

Query: 543 ANSKVVLYAGKMTDSIKKAVSETERR 568
            +     YA  +T + K    + ++R
Sbjct: 906 HHQ---AYAYLLTPTRKAMTDDAQKR 928