Pairwise Alignments

Query, 646 a.a., excinuclease ABC subunit UvrB from Methanococcus maripaludis S2

Subject, 671 a.a., excinuclease ABC, B subunit from Pseudomonas stutzeri RCH2

 Score =  673 bits (1736), Expect = 0.0
 Identities = 348/671 (51%), Positives = 459/671 (68%), Gaps = 37/671 (5%)

Query: 6   FKLKAEFKPKGSQLEAIAGLVKDLEKNPEKSKQTLLGVTGSGKTFTIANVIEKVQKPTLV 65
           F+L   FKP G Q EAI  +++ +E     S QTLLGVTGSGKTF+IANVI  VQ+PTLV
Sbjct: 4   FELVTRFKPAGDQPEAIRQMIEGIEAG--LSHQTLLGVTGSGKTFSIANVIAHVQRPTLV 61

Query: 66  IAHNKTLAAQLYNEFKEFFPENRVEYFVSYYDYYQPESYIPQKDQYIEKDAQINPKIEQM 125
           +A NKTLAAQLY EFK FFP N VEYFVSYYDYYQPE+Y+P  D +IEKDA IN  IEQM
Sbjct: 62  LAPNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQM 121

Query: 126 RLRATSAILSRRDVIIVASVSCIYGLGNPELFKEMGFELKVGEKIKRSDIIEKLVDIQYE 185
           RL AT A+L R D IIV +VSCIYGLG+P+ + +M   +  G+++ + +++ +L  +QY 
Sbjct: 122 RLSATKALLERPDAIIVTTVSCIYGLGDPQSYLKMVLHVDRGDRLDQRELLRRLTGLQYT 181

Query: 186 RNDMELVPGRFRVKGDTLDIIPGYQD-DILRVEMFGDEIDRIYELDPKNMSKKHEIDSFY 244
           RNDM+     FRV+GD +DI P   D + +R+E+F DE++ +   DP       ++  F 
Sbjct: 182 RNDMDFARATFRVRGDVIDIFPAESDLEAVRIELFDDEVESLSAFDPLTGEVIRKLPRFT 241

Query: 245 MYPAKHFVIPEEDKKNAINSILKELDEWLPNL----DMLKSHRLKQKTLYDIEMIEETGS 300
            YP  H+V P E   +AI  I  EL E L  L     ++++ RL+Q+T +D+EMI E G 
Sbjct: 242 FYPKSHYVTPRETLLDAIEKIKDELRERLDYLRSQNKLVEAQRLEQRTRFDLEMIMELGY 301

Query: 301 CKGIENYSRHFENRKEGEPAYCLLDYFPEDFLIVIDESHQTIPQIRGMYKGDRSRKQSLI 360
           C GIENYSR+   R  GEP   L DY P D L+VIDESH ++PQ+  MYKGDRSRK++L+
Sbjct: 302 CNGIENYSRYLSGRDAGEPPPTLFDYLPADALLVIDESHVSVPQVGAMYKGDRSRKETLV 361

Query: 361 DYGFRLPSAYDNRPLKFEEFKKYMNNVIFVSATPGEYELDNSNQVVEQIIRPTGLLDPEV 420
           +YGFRLPSA DNRP++F+E++      IFVSATPG YE +++ +VVEQ++RPTGL+DP++
Sbjct: 362 EYGFRLPSALDNRPMRFDEWEAICPQTIFVSATPGPYEAEHAGRVVEQVVRPTGLVDPQI 421

Query: 421 EIRPIENQVEDIIKETEKMVEKGERVLITTLTKRLAEELTEYLAKRNVKARYLHSDIDTI 480
           E+RP   QV+D++ E  K V K ERVL+TTLTKR+AE+LT+YL+  +V+ RYLHSDIDT+
Sbjct: 422 EVRPALTQVDDLLSEIRKCVVKEERVLVTTLTKRMAEDLTDYLSDHDVRVRYLHSDIDTV 481

Query: 481 ERTEIIRNLRLGKFDCLVGINLLREGLDIPEVGFVGILDADKEGFLRNDKSLIQTIGRAA 540
           ER EIIR+LRLG FD LVGINLLREGLD+PEV  V ILDADKEGFLR+++SLIQTIGRAA
Sbjct: 482 ERVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 541

Query: 541 RNANSKVVLYAGKMTDSIKKAVSETERRRKLQKEHNEKHNITPQTIVKPIREKVVDISDV 600
           RN N + +LYA  +T S+++A+ ETERRR  Q   NE + I P+ + K +R    DI + 
Sbjct: 542 RNLNGRAILYADNVTGSMQRAMDETERRRNKQIAFNEANGIVPKGVTKDVR----DILEG 597

Query: 601 KHIP--------------------------VADIPNVIVELEAEMYEAAEALEFEKAIKI 634
             +P                           ++I   I +LE +M   A  LEFE A + 
Sbjct: 598 ATVPGSRSKKRRGEAKAAEESARYENELRSPSEITKRIRQLEEKMLSLARDLEFEAAAEA 657

Query: 635 RDTIAKLKKKI 645
           RD I KL++++
Sbjct: 658 RDEIHKLRERL 668