Pairwise Alignments

Query, 646 a.a., excinuclease ABC subunit UvrB from Methanococcus maripaludis S2

Subject, 676 a.a., excinuclease ABC subunit UvrB from Vibrio cholerae E7946 ATCC 55056

 Score =  675 bits (1742), Expect = 0.0
 Identities = 353/673 (52%), Positives = 465/673 (69%), Gaps = 34/673 (5%)

Query: 3   SPDFKLKAEFKPKGSQLEAIAGLVKDLEKNPEKSKQTLLGVTGSGKTFTIANVIEKVQKP 62
           S  F+L ++++P G Q  AI  L++ LE     + QTLLGVTGSGKTFT+ANVI   Q+P
Sbjct: 2   SKAFELVSDYQPAGDQPTAIKQLLEGLEAG--LAHQTLLGVTGSGKTFTLANVIATAQRP 59

Query: 63  TLVIAHNKTLAAQLYNEFKEFFPENRVEYFVSYYDYYQPESYIPQKDQYIEKDAQINPKI 122
           T+++A NKTLAAQLY E K FFP N VEYFVSYYDYYQPE+Y+P  D +IEKDA +N  I
Sbjct: 60  TIILAPNKTLAAQLYGEMKAFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHI 119

Query: 123 EQMRLRATSAILSRRDVIIVASVSCIYGLGNPELFKEMGFELKVGEKIKRSDIIEKLVDI 182
           EQMRL AT A+L R+D +IVASVS IYGLG+P+ + +M   L+ G+ I + D++ +L ++
Sbjct: 120 EQMRLSATKALLERKDAVIVASVSAIYGLGDPDSYLKMMLHLRRGDVINQRDMLRRLAEL 179

Query: 183 QYERNDMELVPGRFRVKGDTLDIIPGYQD-DILRVEMFGDEIDRIYELDP-KNMSKKHEI 240
           QY RNDM    G+FRV+G+ +DI P   D + +RVEMF DEI+ I   DP   +    ++
Sbjct: 180 QYSRNDMAFERGQFRVRGEVIDIFPAESDQEAVRVEMFDDEIECISLFDPLTGVITSRDL 239

Query: 241 DSFYMYPAKHFVIPEEDKKNAINSILKELDE----WLPNLDMLKSHRLKQKTLYDIEMIE 296
             F +YP  H+V P E    AI  I  EL       L N  +L+  R+ Q+T +DIEM+ 
Sbjct: 240 ARFTIYPKTHYVTPRERILEAIEQIKSELQVRRQYLLDNNKLLEEQRISQRTQFDIEMMN 299

Query: 297 ETGSCKGIENYSRHFENRKEGEPAYCLLDYFPEDFLIVIDESHQTIPQIRGMYKGDRSRK 356
           E G C GIENYSR+   R EGEP   L DY P D L++IDESH T+PQI  M+KGDRSRK
Sbjct: 300 ELGFCSGIENYSRYLSGRAEGEPPPTLFDYLPHDGLLIIDESHVTVPQIGAMFKGDRSRK 359

Query: 357 QSLIDYGFRLPSAYDNRPLKFEEFKKYMNNVIFVSATPGEYELDNSN-QVVEQIIRPTGL 415
           ++L+++GFRLPSA DNRPLKF+EF+      IFVSATP EYEL  S  +V EQ++RPTGL
Sbjct: 360 ETLVEFGFRLPSALDNRPLKFDEFEALAPQTIFVSATPSEYELTKSGGEVAEQVVRPTGL 419

Query: 416 LDPEVEIRPIENQVEDIIKETEKMVEKGERVLITTLTKRLAEELTEYLAKRNVKARYLHS 475
           LDP +E+RP+  QV+D++ E        ER+L+TTLTKR+AE+LTEYL +  VK RYLHS
Sbjct: 420 LDPIIEVRPVATQVDDLLSEARIRAANDERILVTTLTKRMAEDLTEYLHEHGVKVRYLHS 479

Query: 476 DIDTIERTEIIRNLRLGKFDCLVGINLLREGLDIPEVGFVGILDADKEGFLRNDKSLIQT 535
           DIDT+ER EIIR+LRLG FD LVGINLLREGLD+PEV  V ILDADKEGFLR+++SLIQT
Sbjct: 480 DIDTVERVEIIRDLRLGVFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSERSLIQT 539

Query: 536 IGRAARNANSKVVLYAGKMTDSIKKAVSETERRRKLQKEHNEKHNITPQTIVKPIREKVV 595
           +GRAARN N K +LYA  +T S++KA+ ETERRR+ Q  +NE+  ITPQ + + +++ ++
Sbjct: 540 MGRAARNVNGKAILYADSITKSMRKAIDETERRREKQLAYNEQRGITPQPLKRSVKD-IM 598

Query: 596 DISDV---------KHIPVA---------------DIPNVIVELEAEMYEAAEALEFEKA 631
           ++ D+         K +P+A                +   I +LEA MY+ A+ LEFE A
Sbjct: 599 ELGDIAKSRKQKNSKVVPLAKVAEESAAYQVLTPQQLEKEISKLEAAMYQHAQNLEFELA 658

Query: 632 IKIRDTIAKLKKK 644
            + RD I +L+++
Sbjct: 659 AQKRDEIHQLRQQ 671