Pairwise Alignments

Query, 646 a.a., excinuclease ABC subunit UvrB from Methanococcus maripaludis S2

Subject, 1153 a.a., transcription-repair coupling factor from Synechococcus elongatus PCC 7942

 Score = 57.8 bits (138), Expect = 3e-12
 Identities = 44/179 (24%), Positives = 77/179 (43%), Gaps = 29/179 (16%)

Query: 164 LKVGEKIKRSDIIEKLVDIQYERNDMELVPGRFRVKGDTLDIIPGYQDDILRVEMFGDEI 223
           L+ G+++   ++ ++     YER D     G++  +GD +D+ P   +  +R+E+FGDE+
Sbjct: 143 LQRGQEVNLGELADRFAQFGYERVDTVETEGQWSRRGDIIDLFPVSAELPVRLELFGDEL 202

Query: 224 DRIYELDPKNMSKKHEIDSFYMYPAKHFVIPEEDKKNAINSIL--KELDEWLPNLDMLKS 281
           +R+ E DP       EI+   + P  +         + I + L  + LD+WL   +    
Sbjct: 203 ERLREFDPATQRSLDEIEVLRLTPTSY--------ASVIAAALADRSLDDWLTEAEQ--- 251

Query: 282 HRLKQKTLYDIEMIEETGSCKGIENYSRHFENRKEGEPAYCLLDYFPEDFLIVIDESHQ 340
                      E  +E    +G+  +      R        LLDY P   +I IDE  Q
Sbjct: 252 -----------EAWQEGQPPEGMRRFLGVAFERSAS-----LLDYLPAGTVIAIDEPLQ 294



 Score = 27.7 bits (60), Expect = 0.003
 Identities = 23/87 (26%), Positives = 35/87 (40%), Gaps = 6/87 (6%)

Query: 455 LAEELTEYLAKRNVKARYLHSDIDTIERTEIIRNLRLGKFDCLVGINLLREGLDIPEVGF 514
           +A  L E L    +   +       +E T +  N    + D ++   ++  GLDIP V  
Sbjct: 829 IATRLQEMLPSLRIAVAHGQMPEGELEATMLAFNNN--EADVMICTTIIESGLDIPRVNT 886

Query: 515 VGILDADKEGFLRNDKSLIQTIGRAAR 541
           + I DA + G       L Q  GR  R
Sbjct: 887 ILIEDAQRFGL----SQLYQLRGRVGR 909