Pairwise Alignments

Query, 646 a.a., excinuclease ABC subunit UvrB from Methanococcus maripaludis S2

Subject, 666 a.a., excinuclease ABC subunit B from Synechococcus elongatus PCC 7942

 Score =  726 bits (1873), Expect = 0.0
 Identities = 363/661 (54%), Positives = 489/661 (73%), Gaps = 23/661 (3%)

Query: 6   FKLKAEFKPKGSQLEAIAGLVKDLEKNPEKSKQTLLGVTGSGKTFTIANVIEKVQKPTLV 65
           F+L+A ++P G Q  AIA LV+ ++       QTLLG TG+GKTFTIANVI +V +P LV
Sbjct: 4   FQLQARYQPMGDQPTAIAQLVEQVQAGAPY--QTLLGATGTGKTFTIANVIAQVGRPALV 61

Query: 66  IAHNKTLAAQLYNEFKEFFPENRVEYFVSYYDYYQPESYIPQKDQYIEKDAQINPKIEQM 125
           +AHNKTLAAQL NE +EFFP N VEYF+SYYDYYQPE+YIP  D YI K A IN +I+ +
Sbjct: 62  LAHNKTLAAQLCNELREFFPNNAVEYFISYYDYYQPEAYIPVTDTYIAKTASINEEIDML 121

Query: 126 RLRATSAILSRRDVIIVASVSCIYGLGNPELFKEMGFELKVGEKIKRSDIIEKLVDIQYE 185
           R  AT  +  RRDVI+VAS+SCIYGLG P  + +    L+VG +I   +++ +LVD+QY 
Sbjct: 122 RHSATRNLFERRDVIVVASISCIYGLGIPSEYLKAAIPLEVGAEINMREVLRQLVDVQYS 181

Query: 186 RNDMELVPGRFRVKGDTLDIIPGYQDDILRVEMFGDEIDRIYELDPKNMSKKHEIDSFYM 245
           RND+E   GRFRVKGD L+I P Y+D I+RVE FGDEID I  +DP        +D   +
Sbjct: 182 RNDLESGRGRFRVKGDVLEIGPAYEDRIIRVEFFGDEIDAIRYIDPVTGEILQSLDRLNI 241

Query: 246 YPAKHFVIPEEDKKNAINSILKELDEWLPNLD----MLKSHRLKQKTLYDIEMIEETGSC 301
           YPA+HFV PEE  + AI  I +EL++ L  L     ++++ RL+Q+T YD+EM++E G C
Sbjct: 242 YPARHFVTPEERLEIAIAEIKEELNQQLLTLQAEGKLVEAQRLEQRTRYDLEMLQEVGYC 301

Query: 302 KGIENYSRHFENRKEGEPAYCLLDYFPEDFLIVIDESHQTIPQIRGMYKGDRSRKQSLID 361
            G+ENY+RH   R+ G P  CL+DYFP+D+L+V+DESH T+PQ+RGMY GD+SRK+ L+D
Sbjct: 302 NGVENYARHLAGREPGSPPECLIDYFPKDWLLVVDESHVTVPQLRGMYNGDQSRKKVLVD 361

Query: 362 YGFRLPSAYDNRPLKFEEFKKYMNNVIFVSATPGEYELDNS-NQVVEQIIRPTGLLDPEV 420
           +GFRLPSA DNRPLK EEF + +   IFVSATPG++E++ S  Q+VEQ+IRPTG++DPEV
Sbjct: 362 HGFRLPSAADNRPLKSEEFWEKVRQCIFVSATPGDWEIERSEEQIVEQVIRPTGVVDPEV 421

Query: 421 EIRPIENQVEDIIKETEKMVEKGERVLITTLTKRLAEELTEYLAKRNVKARYLHSDIDTI 480
            +RP E QV+D++ E ++ V + ER LITTLTKR+AE+LT+YL+ R VK RYLHS+I++I
Sbjct: 422 FVRPTEGQVDDLLAEIQQRVRRQERALITTLTKRMAEDLTDYLSDRGVKVRYLHSEINSI 481

Query: 481 ERTEIIRNLRLGKFDCLVGINLLREGLDIPEVGFVGILDADKEGFLRNDKSLIQTIGRAA 540
           ER EI+++LR G FD L+G+NLLREGLD+PEV  V ILDADKEGFLR ++SLIQTIGRAA
Sbjct: 482 ERIEILQDLRNGDFDVLIGVNLLREGLDLPEVSLVAILDADKEGFLRTERSLIQTIGRAA 541

Query: 541 RNANSKVVLYAGKMTDSIKKAVSETERRRKLQKEHNEKHNITPQTIVKPI---------- 590
           R+ N + +LYA +MT+S++KA+SETERRR++Q ++N++HNITPQ I+K            
Sbjct: 542 RHINGQAILYADRMTESMEKAISETERRRRIQLDYNQRHNITPQPIIKRSSNAILSFLEV 601

Query: 591 ------REKVVDISDVKHIPVADIPNVIVELEAEMYEAAEALEFEKAIKIRDTIAKLKKK 644
                 +E  V +S    + + +IPN+I +LEA+M EAA+ LEFE+A + RD I KL+++
Sbjct: 602 SRRLNKQELEVAVSQADDLSLEEIPNLITQLEAQMKEAAKNLEFEEAAQYRDRIKKLRER 661

Query: 645 I 645
           +
Sbjct: 662 L 662