Pairwise Alignments

Query, 646 a.a., excinuclease ABC subunit UvrB from Methanococcus maripaludis S2

Subject, 1171 a.a., transcription-repair coupling factor from Sinorhizobium meliloti 1021

 Score = 53.5 bits (127), Expect = 5e-11
 Identities = 82/388 (21%), Positives = 152/388 (39%), Gaps = 56/388 (14%)

Query: 126 RLRATSAILSRRD-----VIIVASVSCIYGLGNPELFKEMGFELKVGEKIKRSDIIEKLV 180
           RL A SA+++ R      +++V   + +  +   ++ + + F  + G +I+  D+  +L 
Sbjct: 93  RLAALSALIAHRRKPHPAIVLVTINAALQRISPQDVIESLAFTARPGNQIRMDDLAARL- 151

Query: 181 DIQYERNDMELVP-----GRFRVKGDTLDIIPGYQDDILRVEMFGDEIDRIYELDPKNMS 235
               ERN  E VP     G F V+G  LD+      + LR++ FGD ++ I   DP +  
Sbjct: 152 ----ERNGFERVPTVREMGEFAVRGGILDVYVPGSGEPLRLDFFGDTLEAIRSFDPASQR 207

Query: 236 KKHEIDSFYMYPAKHFVIPEEDKKNAINSILKELDEWLPNLDMLKSHRLKQKTLYDIEMI 295
              ++ S  + P     +  E   +     L            L     +   LY  + +
Sbjct: 208 TIGQVRSLDLNPMSEVSLTPETISHFRKQYLS-----------LFGAATRDDALY--QAV 254

Query: 296 EETGSCKGIENYSRHFENRKEGEPAYCLLDYFPEDFLIVID--------ESHQTIPQIRG 347
            E     G+E++   F +R E      + DY  + F IV D        E  + +     
Sbjct: 255 SEGRRYAGMEHWLPLFYDRLE-----TVFDYL-DGFRIVTDHLAREAAAERSKLVLDYYD 308

Query: 348 MYKGDRSRKQSLIDYGFRL-PSAYDNRPLKFEEFKKYMNNVIFVSATPGEYELDNSNQVV 406
                 S  +S +  G    P   D   L  + F + +N++  V  +P       + QVV
Sbjct: 309 ARLASASPGKSQVTQGTPYKPVPPDMLYLTAKGFGEALNDLNAVRLSPFTEHEGEARQVV 368

Query: 407 E-------QIIRPTGLLDPEVEIRPIENQVEDIIKETEKMVEKGERVLITTLTKRLAEEL 459
                   +  +P G  D +       N  +  +K   +   KG +V+++  T+   + L
Sbjct: 369 NIEARQGLRWAKPAGEADND---GTRTNVFDQAVKHIAEKRAKGAKVIVSGWTEGSLDRL 425

Query: 460 TEYLAKR---NVKARYLHSDIDTIERTE 484
            + LA+    N++     SDI +++  E
Sbjct: 426 LQVLAEHGLANIRPVKALSDIGSLKPGE 453



 Score = 34.7 bits (78), Expect = 3e-05
 Identities = 28/104 (26%), Positives = 43/104 (41%), Gaps = 7/104 (6%)

Query: 468 VKARYLHSDIDTIERTEIIRNLRLGKFDCLVGINLLREGLDIPEVGFVGILDADKEGFLR 527
           +K    H  +   E  +I+     G++D L+   ++  GLD+P    + +  AD  G  +
Sbjct: 861 LKVAVAHGQMPATELEDIMNAFYEGRYDVLLSTTIVESGLDVPTANTLIVHRADMFGLAQ 920

Query: 528 NDKSLIQTIGRAARNANSKVVLYAGKMTDSIKKAVSETERRRKL 571
               L Q  GR  R   SKV  +A       K      ERR K+
Sbjct: 921 ----LYQLRGRVGR---SKVRAFALFTLPVNKTLTGPAERRLKV 957