Pairwise Alignments

Query, 646 a.a., excinuclease ABC subunit UvrB from Methanococcus maripaludis S2

Subject, 985 a.a., excinuclease ABC subunit B from Sinorhizobium meliloti 1021

 Score =  658 bits (1697), Expect = 0.0
 Identities = 342/661 (51%), Positives = 461/661 (69%), Gaps = 28/661 (4%)

Query: 7   KLKAEFKPKGSQLEAIAGLVKDLEKNPEKSKQTLLGVTGSGKTFTIANVIEKVQKPTLVI 66
           +++++++P G Q  AIA LV  L     +  Q LLGVTGSGKTFT+A VIE  Q+P +++
Sbjct: 159 RMQSDYEPAGDQPTAIADLVDGLTSG--ERNQVLLGVTGSGKTFTMAKVIEATQRPAVIL 216

Query: 67  AHNKTLAAQLYNEFKEFFPENRVEYFVSYYDYYQPESYIPQKDQYIEKDAQINPKIEQMR 126
           A NKTLAAQLY+EFK FFP+N VEYFVSYYDYYQPE+Y+P+ D YIEK++ IN +I++MR
Sbjct: 217 APNKTLAAQLYSEFKNFFPDNAVEYFVSYYDYYQPEAYVPRSDTYIEKESSINEQIDRMR 276

Query: 127 LRATSAILSRRDVIIVASVSCIYGLGNPELFKEMGFELKVGEKIKRSDIIEKLVDIQYER 186
             AT ++L R DVIIVASVSCIYG+G+ E +  M F++ VG+++ +  ++  LV  QY+R
Sbjct: 277 HSATRSLLERDDVIIVASVSCIYGIGSVETYTAMTFQMSVGDRLDQRQLLADLVAQQYKR 336

Query: 187 NDMELVPGRFRVKGDTLDIIPGYQDDIL-RVEMFGDEIDRIYELDPKNMSKKHEIDSFYM 245
            DM+   G FRV+GDT++I P + +D   R+ MFGDEID I E DP    K  ++ S  +
Sbjct: 337 RDMDFQRGSFRVRGDTIEIFPAHLEDAAWRISMFGDEIDSITEFDPLTGQKTGDLKSVKI 396

Query: 246 YPAKHFVIPEEDKKNAINSILKELDEWLPNLD----MLKSHRLKQKTLYDIEMIEETGSC 301
           Y   H+V P      AI +I +E+ + L  L+    +L++ RL+Q+T YDIEM+E TGSC
Sbjct: 397 YANSHYVTPRPTLNAAIKAIKEEMSQRLAELERAGRLLEAQRLEQRTRYDIEMLEATGSC 456

Query: 302 KGIENYSRHFENRKEGEPAYCLLDYFPEDFLIVIDESHQTIPQIRGMYKGDRSRKQSLID 361
           +GIENYSR+   R+ GEP   L +Y P++ LI IDESH TIPQI GMY+GD  RK +L +
Sbjct: 457 QGIENYSRYLTGRRPGEPPPTLFEYIPDNALIFIDESHVTIPQIGGMYRGDFRRKATLAE 516

Query: 362 YGFRLPSAYDNRPLKFEEFKKYMNNVIFVSATPGEYELDNSNQV-VEQIIRPTGLLDPEV 420
           YGFRLPS  DNRPL+FEE+     + I VSATPG +E++ +  V  EQ+IRPTGL+DP V
Sbjct: 517 YGFRLPSCMDNRPLRFEEWDAMRPDTIAVSATPGAWEMEQAGGVFAEQVIRPTGLIDPPV 576

Query: 421 EIRPIENQVEDIIKETEKMVEKGERVLITTLTKRLAEELTEYLAKRNVKARYLHSDIDTI 480
           E+R  + QV+D++ E  +    G R L+T LTKR+AE+LTEYL ++ V+ RY+HSDIDT+
Sbjct: 577 EVRSAKTQVDDVLGEIRETAAAGYRTLVTVLTKRMAEDLTEYLHEQGVRVRYMHSDIDTL 636

Query: 481 ERTEIIRNLRLGKFDCLVGINLLREGLDIPEVGFVGILDADKEGFLRNDKSLIQTIGRAA 540
           ER EIIR+LRLG FD LVGINLLREGLDIPE GFV ILDADKEGFLR++ SLIQTIGRAA
Sbjct: 637 ERIEIIRDLRLGAFDVLVGINLLREGLDIPECGFVAILDADKEGFLRSETSLIQTIGRAA 696

Query: 541 RNANSKVVLYAGKMTDSIKKAVSETERRRKLQKEHNEKHNITPQTIVKPIREKVVDISDV 600
           RN + KV+LYA  +T S+++A+ ET RRR+ Q  +N +H ITP+++   I + +  + + 
Sbjct: 697 RNVDGKVILYADTITGSMQRAMEETSRRREKQMAYNAEHGITPESVKAKISDILDSVYER 756

Query: 601 KHIPVADIPNV-------------------IVELEAEMYEAAEALEFEKAIKIRDTIAKL 641
            H+  ADI  V                   +  LE +M +AA  L+FEKA ++RD I +L
Sbjct: 757 DHVR-ADISGVAGKGFADGGHLVGNNLQAHLNALEKQMRDAAADLDFEKAARLRDEIKRL 815

Query: 642 K 642
           K
Sbjct: 816 K 816