Pairwise Alignments

Query, 646 a.a., excinuclease ABC subunit UvrB from Methanococcus maripaludis S2

Subject, 1177 a.a., Transcription-repair coupling factor (NCBI) from Rhodospirillum rubrum S1H

 Score = 58.9 bits (141), Expect = 1e-12
 Identities = 31/118 (26%), Positives = 59/118 (50%), Gaps = 1/118 (0%)

Query: 140 IIVASVSCIYGLGNPELFKEMG-FELKVGEKIKRSDIIEKLVDIQYERNDMELVPGRFRV 198
           +++ + S I     P    E G F  +VG ++    +++ L    Y R++  + PG + V
Sbjct: 109 LVLTTASAILQRVPPRQILERGVFSARVGGRLDLGKLLDHLARHGYGRSEQVMEPGEYAV 168

Query: 199 KGDTLDIIPGYQDDILRVEMFGDEIDRIYELDPKNMSKKHEIDSFYMYPAKHFVIPEE 256
           +G  +DI P    + LR+++FGDE+D +   DP +     + D+  + P    V+ +E
Sbjct: 169 RGGIVDIFPPGAPEPLRLDLFGDELDSLRSFDPVSQRTTGQRDALILRPMSEVVLDKE 226



 Score = 35.4 bits (80), Expect = 1e-05
 Identities = 32/116 (27%), Positives = 53/116 (45%), Gaps = 10/116 (8%)

Query: 454 RLAEELTEYLAKRNVKARYLHSDIDTIERTEIIRNLRLGKFDCLVGINLLREGLDIPEVG 513
           ++ E LT  +   +++A   H  +      E++     G++D LV  N++  GLDIP   
Sbjct: 849 KVMERLTTLVP--DIRAVVAHGQMAPSRLEEVMTAFADGQYDVLVATNIVESGLDIPRAN 906

Query: 514 FVGILDADKEGFLRNDKSLIQTIGRAARNANSKVVLYAGKMTDSIKKAVSETERRR 569
            + I  AD  G  +    L Q  GR  R A ++   Y   +T    + VS+T  +R
Sbjct: 907 TIIIHRADMFGLAQ----LYQLRGRVGR-ARARGYAY---LTLPPGRTVSKTAAKR 954