Pairwise Alignments

Query, 646 a.a., excinuclease ABC subunit UvrB from Methanococcus maripaludis S2

Subject, 733 a.a., Excinuclease ABC, B subunit (NCBI) from Rhodospirillum rubrum S1H

 Score =  661 bits (1706), Expect = 0.0
 Identities = 340/656 (51%), Positives = 458/656 (69%), Gaps = 20/656 (3%)

Query: 5   DFKLKAEFKPKGSQLEAIAGLVKDLEKNPEKSKQTLLGVTGSGKTFTIANVIEKVQKPTL 64
           +F+L ++++P G Q +AIA L++ L    +   Q LLGVTGSGKTFT+A VI ++ +PTL
Sbjct: 37  EFRLASDYQPAGDQPQAIAELLRGLAA--QDRDQVLLGVTGSGKTFTMAQVIAEMGRPTL 94

Query: 65  VIAHNKTLAAQLYNEFKEFFPENRVEYFVSYYDYYQPESYIPQKDQYIEKDAQINPKIEQ 124
           ++A NKTLAAQLY EFK FFP+N VEYFVSYYDYYQPE+Y+P+ D YIEKD+ IN +I++
Sbjct: 95  ILAPNKTLAAQLYGEFKNFFPDNAVEYFVSYYDYYQPEAYVPRTDTYIEKDSSINEQIDR 154

Query: 125 MRLRATSAILSRRDVIIVASVSCIYGLGNPELFKEMGFELKVGEKIKRSDIIEKLVDIQY 184
           MR  AT A+L RRDVIIVASVSCIYG+G+ E +  M   +KVG  + R+D+++ LV++Q+
Sbjct: 155 MRHAATRALLERRDVIIVASVSCIYGIGSVESYSRMIIPIKVGTTLPRADLLKALVELQF 214

Query: 185 ERNDMELVPGRFRVKGDTLDIIPG-YQDDILRVEMFGDEIDRIYELDPKNMSKKHEIDSF 243
            RND+    G FRV+GD+++I P  Y+D   RV ++GDEI+ + E DP        +D  
Sbjct: 215 TRNDIAFTRGMFRVRGDSVEIFPAHYEDRAWRVSLWGDEIESVREFDPLTGEITASLDEV 274

Query: 244 YMYPAKHFVIPEEDKKNAINSILKELDEWLPNL----DMLKSHRLKQKTLYDIEMIEETG 299
            +YPA H V P      A+ +I  EL E L        +L++ RL+Q+T +D+EMIE TG
Sbjct: 275 TVYPASHHVTPRPALSQAVRTIKAELKETLARFYDQGKVLEAQRLEQRTTFDLEMIEATG 334

Query: 300 SCKGIENYSRHFENRKEGEPAYCLLDYFPEDFLIVIDESHQTIPQIRGMYKGDRSRKQSL 359
            CK IENYSRH   R+ G+P   L +Y PED L+ +DESH  +PQI GM++GD +RK  L
Sbjct: 335 HCKSIENYSRHLTGRRPGDPPPTLFEYLPEDALLFVDESHVAVPQIGGMFRGDFNRKSVL 394

Query: 360 IDYGFRLPSAYDNRPLKFEEFKKYMNNVIFVSATPGEYELDNSNQVV-EQIIRPTGLLDP 418
            ++GFRLPS  DNRPLKFEE+       IFVSATPG +EL+ +  VV EQ+IRPTGL+DP
Sbjct: 395 AEFGFRLPSCVDNRPLKFEEWDVMRPPSIFVSATPGRWELERTGGVVAEQVIRPTGLVDP 454

Query: 419 EVEIRPIENQVEDIIKETEKMVEKGERVLITTLTKRLAEELTEYLAKRNVKARYLHSDID 478
              IRP+E QV+D++ E +    +GERVL+TTLTKR++E+LTEYL ++ V+ RY+HSDI+
Sbjct: 455 VCIIRPVEAQVDDLLGEVKACAARGERVLVTTLTKRMSEDLTEYLTEQGVRVRYMHSDIE 514

Query: 479 TIERTEIIRNLRLGKFDCLVGINLLREGLDIPEVGFVGILDADKEGFLRNDKSLIQTIGR 538
           T+ER EIIR+LRLG FD LVGINLLREGLDIPE   V ILDADKEGFLR+  SLIQTIGR
Sbjct: 515 TLERIEIIRDLRLGAFDVLVGINLLREGLDIPECALVAILDADKEGFLRSRTSLIQTIGR 574

Query: 539 AARNANSKVVLYAGKMTDSIKKAVSETERRRKLQKEHNEKHNITPQTIVKPIREKVVDIS 598
           AARN   +V+LYA KMTDS+  A+ ET RRR+ Q+++N  H ITP+T+   I + +  + 
Sbjct: 575 AARNVGGRVILYADKMTDSLTFAIEETSRRRQRQQDYNAAHGITPETVRSRISDVLSSVY 634

Query: 599 DVKHIPVA------------DIPNVIVELEAEMYEAAEALEFEKAIKIRDTIAKLK 642
           +  ++ V              +   + +L+  M  AA  LEFE+A ++RD I +L+
Sbjct: 635 EKDYVTVTTGVSGDNQLVGKSLREHLADLDKRMRAAAADLEFEEAGRLRDEIRRLE 690