Pairwise Alignments

Query, 646 a.a., excinuclease ABC subunit UvrB from Methanococcus maripaludis S2

Subject, 1147 a.a., transcription-repair coupling factor from Rahnella sp. WP5

 Score = 58.5 bits (140), Expect = 2e-12
 Identities = 66/300 (22%), Positives = 119/300 (39%), Gaps = 39/300 (13%)

Query: 40  LLG-VTGSGKTFTIANVIEKVQKPTLVIAHNKTLAAQLYNEFKEFFPENRVEYFVSY--- 95
           LLG +TGS      A + E+   P L+IA +   A +L +E ++F  +N+V     +   
Sbjct: 18  LLGQLTGSACALECAQISERHTGPILLIAPDMQNALRLRDEIQQF-TDNKVLSIADWETL 76

Query: 96  -YDYYQPESYIPQKDQYIEKDAQINPKIEQMRLRATSAILSRRDVIIVASVSCIYGLGNP 154
            YD + P   I            I+ ++  +    T      R +II+   + +  +   
Sbjct: 77  PYDSFSPHQEI------------ISSRLSSLYQLPTM----ERGIIILPVNTLMQRVCPH 120

Query: 155 ELFKEMGFELKVGEKIKRSDIIEKLVDIQYERNDMELVPGRFRVKGDTLDIIPGYQDDIL 214
           E        +K G+++ R  +  +L    Y   D  +  G F  +G  LD+ P   ++  
Sbjct: 121 EFLHGHALVMKKGQQLSRDKLRAQLEQAGYRSVDQVMEHGEFATRGALLDLYPMGSEEPY 180

Query: 215 RVEMFGDEIDRIYELDPKNMSKKHEIDSFYMYPAKHFVIPEEDKKNAINSILKELDEWLP 274
           R++ F DEID +   D        E++   + PA  F       KNAI     +  E   
Sbjct: 181 RIDFFDDEIDSLRIFDVDTQRTLSEVEHINLLPAHEF----PTDKNAIELFRSQWRE--- 233

Query: 275 NLDMLKSHRLKQKTLYDIEMIEETGSCKGIENYSRHFENRKEGEPAYCLLDYFPEDFLIV 334
                    +++   +  + + +     GIE +   F +    +P   L  Y PE+ L++
Sbjct: 234 ------KFEVRRDAEHVYQQVSKGTFPAGIEYWQPLFFS----QPLTTLFSYLPENTLVL 283