Pairwise Alignments

Query, 646 a.a., excinuclease ABC subunit UvrB from Methanococcus maripaludis S2

Subject, 672 a.a., excinuclease ABC subunit B (RefSeq) from Shewanella loihica PV-4

 Score =  686 bits (1771), Expect = 0.0
 Identities = 362/672 (53%), Positives = 469/672 (69%), Gaps = 30/672 (4%)

Query: 1   MSSPDFKLKAEFKPKGSQLEAIAGLVKDLEKNPEKSKQTLLGVTGSGKTFTIANVIEKVQ 60
           MS   F L +++ P G Q  AI  LV  L+     + QTLLGVTGSGKTFTIANVI+++Q
Sbjct: 1   MSESAFDLVSQYAPAGDQPGAIKQLVDGLDAG--LANQTLLGVTGSGKTFTIANVIKQMQ 58

Query: 61  KPTLVIAHNKTLAAQLYNEFKEFFPENRVEYFVSYYDYYQPESYIPQKDQYIEKDAQINP 120
           +PT+++A NKTLAAQLY E KEFFP N VEYFVSYYDYYQPE+Y+P  + +IEKDA +N 
Sbjct: 59  RPTIIMAPNKTLAAQLYGEMKEFFPNNAVEYFVSYYDYYQPEAYVPSTNTFIEKDASVNA 118

Query: 121 KIEQMRLRATSAILSRRDVIIVASVSCIYGLGNPELFKEMGFELKVGEKIKRSDIIEKLV 180
            IEQMRL AT A+L RRDV+++ASVS IYGLG+PE + +M   L+ G+ + + +I+++L 
Sbjct: 119 HIEQMRLSATKALLERRDVVLIASVSAIYGLGDPESYMKMLLHLRQGDFMGQREILQRLS 178

Query: 181 DIQYERNDMELVPGRFRVKGDTLDIIPGYQD-DILRVEMFGDEIDRIYELDPKNMSKKHE 239
           ++QY RND+EL  G FRV+G+ +DI P   D   +RVE+F DEIDR+   DP        
Sbjct: 179 ELQYTRNDIELDRGTFRVRGEVIDIFPAESDKQAIRVELFDDEIDRLSLFDPLTGHILQR 238

Query: 240 IDSFYMYPAKHFVIPEEDKKNAINSILKELDE----WLPNLDMLKSHRLKQKTLYDIEMI 295
           I    +YP  H+V P E    A   I +EL E     L N  ++++ R+ ++  YDIEM+
Sbjct: 239 IARTTVYPKTHYVTPREKILAATEDIKQELRERKQYLLDNNKLIEAQRISERVQYDIEMM 298

Query: 296 EETGSCKGIENYSRHFENRKEGEPAYCLLDYFPEDFLIVIDESHQTIPQIRGMYKGDRSR 355
            E G C GIENYSR+   R+ GE    LLDY P D L+++DESH T+PQI  MYKGDRSR
Sbjct: 299 TELGYCSGIENYSRYLSGRRPGEGPPTLLDYLPADGLLILDESHVTVPQIGAMYKGDRSR 358

Query: 356 KQSLIDYGFRLPSAYDNRPLKFEEFKKYMNNVIFVSATPGEYELDNSN-QVVEQIIRPTG 414
           K +L++YGFRLPSA DNRPLKFEEF+  M   IFVSATP +YELD S+ ++ EQ++RPTG
Sbjct: 359 KMNLVEYGFRLPSALDNRPLKFEEFESLMPQTIFVSATPAQYELDKSDGEIAEQVVRPTG 418

Query: 415 LLDPEVEIRPIENQVEDIIKETEKMVEKGERVLITTLTKRLAEELTEYLAKRNVKARYLH 474
           LLDPE+E+RP+  QV+D++ E  K V   ERVL+TTLTKR+AE+LTEYL +  VK RYLH
Sbjct: 419 LLDPEIEVRPVAIQVDDLLSEANKRVAVNERVLVTTLTKRMAEDLTEYLDEHGVKVRYLH 478

Query: 475 SDIDTIERTEIIRNLRLGKFDCLVGINLLREGLDIPEVGFVGILDADKEGFLRNDKSLIQ 534
           SDIDT+ER EIIR+LRLG FD LVGINLLREGLD+PEV  V ILDADKEGFLR+++SLIQ
Sbjct: 479 SDIDTVERVEIIRDLRLGVFDVLVGINLLREGLDMPEVSLVCILDADKEGFLRSERSLIQ 538

Query: 535 TIGRAARNANSKVVLYAGKMTDSIKKAVSETERRRKLQKEHNEKHNITPQTIVKPIREKV 594
           TIGRAARN N KV+LYA  MT S+ KA+ ETERRR+ Q+E N  + ITP+ + K I + V
Sbjct: 539 TIGRAARNVNGKVILYADNMTKSMAKAIGETERRREKQREFNLANGITPKGVSKKIAD-V 597

Query: 595 VDISD-----VKHIP----------------VADIPNVIVELEAEMYEAAEALEFEKAIK 633
           +D+ D      K +P                 + + + I ELE  M++ A  LEFE+A  
Sbjct: 598 MDLGDYNEHTAKVLPKYQKVAESRTTYAKQDASSLSHQIDELEKRMHQHARDLEFEQAAA 657

Query: 634 IRDTIAKLKKKI 645
           +RD +  L++ +
Sbjct: 658 LRDEVLALREAL 669