Pairwise Alignments

Query, 646 a.a., excinuclease ABC subunit UvrB from Methanococcus maripaludis S2

Subject, 1160 a.a., transcription-repair coupling factor (RefSeq) from Shewanella loihica PV-4

 Score = 68.9 bits (167), Expect = 1e-15
 Identities = 52/218 (23%), Positives = 88/218 (40%), Gaps = 12/218 (5%)

Query: 35  KSKQTLLGVTGSGKTFTIANVIEKVQKPTLVIAHNKTLAAQLYNEFKEFFPENRVEYFVS 94
           KS QTL  +TG+ +  ++A + E+    TLV+  +   A +L  E         +     
Sbjct: 16  KSPQTLSQLTGAARAISLAKLCEQYSSMTLVVTPDTPSALRLEAELGYLLAPKSI----- 70

Query: 95  YYDYYQPESYIPQKDQYIEKDAQINPKIEQMRLRATSAILSRRDVIIVASVSCIYGLGNP 154
                 P    P ++         +  +   RL   S I S    +++  +S +     P
Sbjct: 71  ------PVMLFPDRETLPYDSFSPHQDLVSQRLETLSRIPSAGHSLVIVPMSTLMVKLPP 124

Query: 155 ELFKEMG-FELKVGEKIKRSDIIEKLVDIQYERNDMELVPGRFRVKGDTLDIIPGYQDDI 213
           + F       L  G+      +  +LV+  Y   +     G F V+G  +D+ P      
Sbjct: 125 QSFLTGNVLLLSKGDNYPLEAVRSQLVNTGYHHVEQVYEHGEFAVRGSIIDLFPMGAQSP 184

Query: 214 LRVEMFGDEIDRIYELDPKNMSKKHEIDSFYMYPAKHF 251
            R+E+F DE++ I E DP+      EI+S  + PAK F
Sbjct: 185 YRIELFDDEVESIREFDPETQRSSGEIESIRLLPAKEF 222