Pairwise Alignments

Query, 646 a.a., excinuclease ABC subunit UvrB from Methanococcus maripaludis S2

Subject, 690 a.a., excinuclease ABC, B subunit from Dechlorosoma suillum PS

 Score =  682 bits (1759), Expect = 0.0
 Identities = 351/660 (53%), Positives = 464/660 (70%), Gaps = 23/660 (3%)

Query: 6   FKLKAEFKPKGSQLEAIAGLVKDLEKNPEKSKQTLLGVTGSGKTFTIANVIEKVQKPTLV 65
           ++L   F P G Q EAI  LV+ LE     S QTLLGVTGSGKT+T+ANVI +  +P L+
Sbjct: 21  YRLHQPFPPAGDQPEAIRLLVEGLEDG--LSYQTLLGVTGSGKTYTMANVIARTGRPALI 78

Query: 66  IAHNKTLAAQLYNEFKEFFPENRVEYFVSYYDYYQPESYIPQKDQYIEKDAQINPKIEQM 125
           +A NKTLAAQLY EF+EF PEN VEYFVSYYDYYQPE+Y+P +D +IEKD+ IN  IEQM
Sbjct: 79  LAPNKTLAAQLYAEFREFLPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSSINDHIEQM 138

Query: 126 RLRATSAILSRRDVIIVASVSCIYGLGNPELFKEMGFELKVGEKIKRSDIIEKLVDIQYE 185
           RL AT ++L RRDV+IVA+VSCIYG+G+ + +  M   L+ G+K  + DII++L ++QYE
Sbjct: 139 RLSATKSLLERRDVVIVATVSCIYGIGDKDDYHNMILHLRQGDKAGQRDIIKRLSEMQYE 198

Query: 186 RNDMELVPGRFRVKGDTLDIIPG-YQDDILRVEMFGDEIDRIYELDPKNMSKKHEIDSFY 244
           RN+++   G FRV+GD +DI P  + +  +RV +F DEI+ +   DP      H++  F 
Sbjct: 199 RNEVDFQRGTFRVRGDVIDIFPAEHAEHAIRVCLFDDEIETLQLFDPLTGHLLHKLPRFT 258

Query: 245 MYPAKHFVIPEEDKKNAINSILKELDEWLPNLD----MLKSHRLKQKTLYDIEMIEETGS 300
           +YP+ H+V P      A+  I +EL + L        ++++ R++Q+T +D+EM+ E G 
Sbjct: 259 IYPSSHYVTPRATVLRAVEGIKEELRKRLEFFHKEQRLVEAQRIEQRTRFDLEMLNELGF 318

Query: 301 CKGIENYSRHFENRKEGEPAYCLLDYFPEDFLIVIDESHQTIPQIRGMYKGDRSRKQSLI 360
           CKGIENYSRH   RK GE    LLDY P D L+ IDESH  I Q+  MYKGDRSRK++L+
Sbjct: 319 CKGIENYSRHLSGRKPGEAPPTLLDYLPPDALMFIDESHVAIGQVGAMYKGDRSRKENLV 378

Query: 361 DYGFRLPSAYDNRPLKFEEFKKYMNNVIFVSATPGEYELDNSNQVVEQIIRPTGLLDPEV 420
           DYGFRLPSA DNRPLKFEEF++ M   IFVSATP +YE  +  QVVEQ++RPTGL+DP V
Sbjct: 379 DYGFRLPSALDNRPLKFEEFERLMRQTIFVSATPSDYEKQHQGQVVEQVVRPTGLIDPVV 438

Query: 421 EIRPIENQVEDIIKETEKMVEKGERVLITTLTKRLAEELTEYLAKRNVKARYLHSDIDTI 480
            +RP   QV+D++ E  K +   ERVL+TTLTKR+AE+LT+YL +  +K RY+HSDIDT+
Sbjct: 439 LVRPAMTQVDDLLSEIRKRIAVSERVLVTTLTKRMAEDLTDYLRENGIKVRYVHSDIDTV 498

Query: 481 ERTEIIRNLRLGKFDCLVGINLLREGLDIPEVGFVGILDADKEGFLRNDKSLIQTIGRAA 540
           ER EIIR+LRLG+FD LVGINLLREGLDIPEV  V ILDADKEGFLR+++SLIQTIGRAA
Sbjct: 499 ERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAA 558

Query: 541 RNANSKVVLYAGKMTDSIKKAVSETERRRKLQKEHNEKHNITPQTIVKPIREKVVDISD- 599
           R+ N   +LYA ++TDS+++A+ ETERRR  Q  HNE H ITP+ + K I++ +  + D 
Sbjct: 559 RHLNGTAILYADRVTDSMRRAMDETERRRAKQMAHNEAHGITPKGVSKRIKDIIDGVYDP 618

Query: 600 ---VKHIPVA------------DIPNVIVELEAEMYEAAEALEFEKAIKIRDTIAKLKKK 644
               K +  A            ++   I  LE +M E+A+ LEFEKA   RD + +LK++
Sbjct: 619 DAAQKELKAAQQQAVYETMSEKNLAKEIKRLEKQMLESAKNLEFEKAAAARDELFRLKQQ 678