Pairwise Alignments

Query, 646 a.a., excinuclease ABC subunit UvrB from Methanococcus maripaludis S2

Subject, 673 a.a., excinuclease ABC, B subunit (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  692 bits (1786), Expect = 0.0
 Identities = 364/671 (54%), Positives = 474/671 (70%), Gaps = 31/671 (4%)

Query: 1   MSSPDFKLKAEFKPKGSQLEAIAGLVKDLEKNPEKSKQTLLGVTGSGKTFTIANVIEKVQ 60
           MS   F+L+++F P G Q  AIA LV  LE     + QTLLGVTGSGKTFTIANVI K+ 
Sbjct: 1   MSESVFQLESQFAPAGDQPTAIAKLVDGLESG--LACQTLLGVTGSGKTFTIANVIAKLG 58

Query: 61  KPTLVIAHNKTLAAQLYNEFKEFFPENRVEYFVSYYDYYQPESYIPQKDQYIEKDAQINP 120
           +PT+++A NKTLAAQLY E KEFFP N VEYFVSYYDYYQPE+Y+P  + +IEKDA +N 
Sbjct: 59  RPTIIMAPNKTLAAQLYGEMKEFFPNNAVEYFVSYYDYYQPEAYVPASNTFIEKDASVNA 118

Query: 121 KIEQMRLRATSAILSRRDVIIVASVSCIYGLGNPELFKEMGFELKVGEKIKRSDIIEKLV 180
            IEQMRL AT A+L R+DV+++ASVS IYGLG+P+ + +M   L+ G+ + + DI+++L 
Sbjct: 119 HIEQMRLSATKALLERKDVVLIASVSAIYGLGDPDSYLKMLLHLRQGDTMGQRDILKRLS 178

Query: 181 DIQYERNDMELVPGRFRVKGDTLDIIPGYQDDI-LRVEMFGDEIDRIYELDPKNMSKKHE 239
           ++QY RND+EL  G FRV+G+ +DI P   D   +RVE+F DEI+R+ E DP        
Sbjct: 179 ELQYTRNDIELQRGTFRVRGEVIDIFPADSDRYAIRVELFDDEIERLSEFDPLTGQIVKR 238

Query: 240 IDSFYMYPAKHFVIPEEDKKNAINSILKELDE----WLPNLDMLKSHRLKQKTLYDIEMI 295
           I    +YP  H+V P E    A   I +EL E     L N  ++++ R+ ++  YDIEM+
Sbjct: 239 IARTTVYPKTHYVTPREKILEATELIKQELRERKQYLLDNNKLIEAQRIHERVQYDIEMM 298

Query: 296 EETGSCKGIENYSRHFENRKEGEPAYCLLDYFPEDFLIVIDESHQTIPQIRGMYKGDRSR 355
            E G C GIENYSR+   R  GE    LLDY P D L+VIDESH T+PQI  MYKGDRSR
Sbjct: 299 VELGYCSGIENYSRYLSGRAPGEGPPTLLDYLPADGLLVIDESHVTVPQIGAMYKGDRSR 358

Query: 356 KQSLIDYGFRLPSAYDNRPLKFEEFKKYMNNVIFVSATPGEYELDNSN-QVVEQIIRPTG 414
           K +L++YGFRLPSA DNRPLKFEEF++ M   I+VSATP  YEL+ S  ++VEQ++RPTG
Sbjct: 359 KTTLVEYGFRLPSALDNRPLKFEEFEQLMPQTIYVSATPNSYELEKSGGEIVEQVVRPTG 418

Query: 415 LLDPEVEIRPIENQVEDIIKETEKMVEKGERVLITTLTKRLAEELTEYLAKRNVKARYLH 474
           LLDPE+E+RP+  QV+D++ E  K V   ERVL+TTLTKR++E+LTEYL +  VK RYLH
Sbjct: 419 LLDPELEVRPVGIQVDDLLSEVAKRVAVNERVLVTTLTKRMSEDLTEYLDEHGVKVRYLH 478

Query: 475 SDIDTIERTEIIRNLRLGKFDCLVGINLLREGLDIPEVGFVGILDADKEGFLRNDKSLIQ 534
           SDIDT+ER EIIR+LRLGKFD LVGINLLREGLD+PEV  V ILDADKEGFLR+++SLIQ
Sbjct: 479 SDIDTVERVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVCILDADKEGFLRSERSLIQ 538

Query: 535 TIGRAARNANSKVVLYAGKMTDSIKKAVSETERRRKLQKEHNEKHNITPQTIVKPIREKV 594
           TIGRAARN N KV+LYA ++T+S+ KA+ ETERRR+ Q+ +N +H I P+ +VK I + V
Sbjct: 539 TIGRAARNVNGKVILYADRITNSMAKAIGETERRREKQRLYNLEHGIVPKGVVKRITD-V 597

Query: 595 VDISDVK----------------------HIPVADIPNVIVELEAEMYEAAEALEFEKAI 632
           +D+ D +                      H   A + + I +LE +M+E A  LEFE+A 
Sbjct: 598 MDVDDGREAEKGHGQASLGRVAEPKAKRYHADAAQLSHDIDKLEKQMHEHARNLEFEQAA 657

Query: 633 KIRDTIAKLKK 643
            +RD + +L++
Sbjct: 658 ALRDEVKRLRE 668