Pairwise Alignments

Query, 646 a.a., excinuclease ABC subunit UvrB from Methanococcus maripaludis S2

Subject, 1164 a.a., transcription-repair coupling factor (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 73.9 bits (180), Expect = 4e-17
 Identities = 59/232 (25%), Positives = 101/232 (43%), Gaps = 15/232 (6%)

Query: 22  IAGLVKDLEKNPEKSKQTLLGVTGSGKTFTIANVIEKVQKPTLVIAHNKTLAAQLYNEFK 81
           I+ L   + KN  +  QTL  + G G+  T+A++I + Q  TL++  +   A  L  E  
Sbjct: 4   ISALTPPVVKNGTQM-QTLSCIAGVGQAVTLASLIRQHQGTTLIVTSDTPTALSLELELN 62

Query: 82  EFFPENRVEYFVSYYDYYQP-ESYIPQKDQYIEKDAQINPKIEQMRLRATSAIL-SRRDV 139
               +  ++  +       P +S+ P +D            +   RL   S I  +   V
Sbjct: 63  YLLAKTAIKVRLFPDRETLPYDSFSPHQD------------LISQRLETLSQITHAEHSV 110

Query: 140 IIVASVSCIYGLGNPELFKEMGFELKVGEKIKRSDIIEKLVDIQYERNDMELVPGRFRVK 199
           +IV   + +  L          F LK G+K +  D+ ++L D  Y   +     G F ++
Sbjct: 111 VIVPVTTLMMRLPPKSYLSSNVFVLKKGDKYQLHDVRQQLTDTGYHLVEQVYEHGEFAIR 170

Query: 200 GDTLDIIPGYQDDILRVEMFGDEIDRIYELDPKNMSKKHEIDSFYMYPAKHF 251
           G  LDI P   +  LR+E+F DE++ I   DP+       +++  + PAK F
Sbjct: 171 GSILDIFPTGVNMPLRIELFDDEVETIRHFDPETQRSSTPVNAVRLLPAKEF 222