Pairwise Alignments

Query, 646 a.a., excinuclease ABC subunit UvrB from Methanococcus maripaludis S2

Subject, 1148 a.a., transcription-repair coupling factor from Klebsiella michiganensis M5al

 Score = 52.4 bits (124), Expect = 1e-10
 Identities = 61/293 (20%), Positives = 116/293 (39%), Gaps = 32/293 (10%)

Query: 43  VTGSGKTFTIANVIEKVQKPTLVIAHNKTLAAQLYNEFKEFFPENRVEYFVSYYDYYQPE 102
           +TG+     +A + E+   P ++IA +   A +L +E ++F   + +   ++ ++    +
Sbjct: 22  LTGAACATLVAEMAERHGGPVVLIAPDMQNALRLNDEIRQF--TDSMVAGLADWETLPYD 79

Query: 103 SYIPQKDQYIEKDAQINPKIEQMRLRATSAILSRRDVIIVASVSCIYGLGNPELFKE-MG 161
           S+ P +D            I   RL     + +    +++  VS +     P  F     
Sbjct: 80  SFSPHQD------------IISSRLATLYQLPTMERGVLIIPVSTLMQRVCPHNFLHGHA 127

Query: 162 FELKVGEKIKRSDIIEKLVDIQYERNDMELVPGRFRVKGDTLDIIPGYQDDILRVEMFGD 221
             +K G+++ R  +  +L    Y   D  +  G +  +G  LD+ P   +   R++ F D
Sbjct: 128 LVMKKGQRLSRDALRAQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSEQPYRLDFFDD 187

Query: 222 EIDRIYELDPKNMSKKHEIDSFYMYPAKHFVIPEEDKKNAINSILKELDEWLPNLDMLKS 281
           EID +   D  +     E+ S  + PA  F   +        +I     +W    +    
Sbjct: 188 EIDSLRLFDVDSQRTLEEVASINLLPAHEFPTDQA-------AIELFRSQWRDRFE---- 236

Query: 282 HRLKQKTLYDIEMIEETGSCKGIENYSRHFENRKEGEPAYCLLDYFPEDFLIV 334
             +K+   +  + + +     GIE +   F N    EP   L  YFP   LIV
Sbjct: 237 --VKRDAEHIYQQVSKGTLPAGIEYWQPLFFN----EPLPPLFSYFPAKTLIV 283