Pairwise Alignments

Query, 646 a.a., excinuclease ABC subunit UvrB from Methanococcus maripaludis S2

Subject, 671 a.a., excinuclease ABC subunit B from Klebsiella michiganensis M5al

 Score =  692 bits (1787), Expect = 0.0
 Identities = 372/672 (55%), Positives = 468/672 (69%), Gaps = 36/672 (5%)

Query: 1   MSSPDFKLKAEFKPKGSQLEAIAGLVKDLEKNPEKSKQTLLGVTGSGKTFTIANVIEKVQ 60
           MS P FKL + F+P G Q EAI  L + LE     + QTLLGVTGSGKTFTIANVI  +Q
Sbjct: 1   MSKP-FKLHSAFRPSGDQPEAIRRLEEGLEDG--LAHQTLLGVTGSGKTFTIANVIADLQ 57

Query: 61  KPTLVIAHNKTLAAQLYNEFKEFFPENRVEYFVSYYDYYQPESYIPQKDQYIEKDAQINP 120
           +PT+V+A NKTLAAQLY E KEFFPEN VEYFVSYYDYYQPE+Y+P  D +IEKDA +N 
Sbjct: 58  RPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNE 117

Query: 121 KIEQMRLRATSAILSRRDVIIVASVSCIYGLGNPELFKEMGFELKVGEKIKRSDIIEKLV 180
            IEQMRL AT A+L RRDV++VASVS IYGLG+P+L+ +M   L VG  I +  I+ +L 
Sbjct: 118 HIEQMRLSATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLA 177

Query: 181 DIQYERNDMELVPGRFRVKGDTLDIIPGYQDDI-LRVEMFGDEIDRIYELDPKNMSKKHE 239
           ++QY RND     G FRV+G+ +DI P   DD+ LRVE+F +E++R+   DP     +  
Sbjct: 178 ELQYTRNDQAFQRGTFRVRGEVIDIFPAESDDVALRVELFDEEVERLSLFDPLTGHIEST 237

Query: 240 IDSFYMYPAKHFVIPEEDKKNAINSILKELDE----WLPNLDMLKSHRLKQKTLYDIEMI 295
           I  F +YP  H+V P E    A+  I  EL E     L N  +L+  RL Q+T +D+EM+
Sbjct: 238 IPRFTVYPKTHYVTPRERIVQAMEEIKVELAERRKVLLENNKLLEEQRLSQRTQFDLEMM 297

Query: 296 EETGSCKGIENYSRHFENRKEGEPAYCLLDYFPEDFLIVIDESHQTIPQIRGMYKGDRSR 355
            E G C GIENYSR+   R  GEP   L DY P D L+VIDESH TIPQI GMY+GDR+R
Sbjct: 298 NELGYCSGIENYSRYLSGRGPGEPPPTLFDYLPADGLLVIDESHVTIPQIGGMYRGDRAR 357

Query: 356 KQSLIDYGFRLPSAYDNRPLKFEEFKKYMNNVIFVSATPGEYELDNS-NQVVEQIIRPTG 414
           K++L++YGFRLPSA DNRP+KFEEF+      I+VSATPG YELD S ++VV+Q++RPTG
Sbjct: 358 KETLVEYGFRLPSALDNRPMKFEEFEALAPQTIYVSATPGAYELDKSGDEVVDQVVRPTG 417

Query: 415 LLDPEVEIRPIENQVEDIIKETEKMVEKGERVLITTLTKRLAEELTEYLAKRNVKARYLH 474
           LLDP +E+RP+  QV+D++ E        ERVL+TTLTKR+AE+LTEYL +   + RYLH
Sbjct: 418 LLDPIIEVRPVGTQVDDLLSEIRLRTAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLH 477

Query: 475 SDIDTIERTEIIRNLRLGKFDCLVGINLLREGLDIPEVGFVGILDADKEGFLRNDKSLIQ 534
           SDIDT+ER EIIR+LRLG+FD LVGINLLREGLD+PEV  V ILDADKEGFLR+++SLIQ
Sbjct: 478 SDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQ 537

Query: 535 TIGRAARNANSKVVLYAGKMTDSIKKAVSETERRRKLQKEHNEKHNITPQTIVKPIREKV 594
           TIGRAARN N K +LY  K+T S+ KA+ ETERRR+ Q+ +NE+H I PQ + K    KV
Sbjct: 538 TIGRAARNINGKAILYGDKITPSMAKAIGETERRREKQQAYNEEHGIVPQGLNK----KV 593

Query: 595 VDI-------------------SDVKHIPVADIPNV----IVELEAEMYEAAEALEFEKA 631
           VDI                   S V+   VA  P      I ELE +M + A+ LEFE+A
Sbjct: 594 VDILALGQNIAKTKTKGRGKSRSPVEADTVALTPKALQQKIHELEGQMMQHAQNLEFEEA 653

Query: 632 IKIRDTIAKLKK 643
            +IRD + +L++
Sbjct: 654 AQIRDQLHQLRE 665