Pairwise Alignments

Query, 646 a.a., excinuclease ABC subunit UvrB from Methanococcus maripaludis S2

Subject, 1143 a.a., transcription-repair coupling factor from Ralstonia sp. UNC404CL21Col

 Score = 62.4 bits (150), Expect = 1e-13
 Identities = 48/226 (21%), Positives = 95/226 (42%), Gaps = 15/226 (6%)

Query: 36  SKQTLLGVTGSGKTFTIANVIE--KVQKPTL-VIAHNKTLAAQLYNEFKEFFPENRVEYF 92
           S+    G+ G+     +A  +E  +   P L V+  N   A +L  E + F P+ RV+  
Sbjct: 16  SRFVFSGLQGAADALLLARYLEQHRAAVPMLAVVCANAVDAQRLAEELRWFAPQARVKLL 75

Query: 93  VSYYDYYQPESYIPQKDQYIEKDAQINPKIEQMRLRATSAILSRRDVIIVASVSCIYGLG 152
             + +    +++ P +D   E+ A ++                  D+++V + + +  + 
Sbjct: 76  PDW-ETLPYDNFSPHQDLISERLATLHDLQN-----------GACDILLVPASTALQRVA 123

Query: 153 NPELFKEMGFELKVGEKIKRSDIIEKLVDIQYERNDMELVPGRFRVKGDTLDIIPGYQDD 212
            P       F  K GEK+  + +  +     YE     + PG + V+G  +D+ P     
Sbjct: 124 PPSFLAAYTFFFKKGEKLDEAALKAQFTLAGYEHVSAVMRPGEYSVRGGLIDLFPMGSPL 183

Query: 213 ILRVEMFGDEIDRIYELDPKNMSKKHEIDSFYMYPAKHFVIPEEDK 258
             R+++FGDEI+ I   DP      + ++   + P + F + E  +
Sbjct: 184 PYRLDLFGDEIETIRSFDPDTQRSLYPVNEVRLLPGREFPMDEASR 229



 Score = 28.1 bits (61), Expect = 0.002
 Identities = 34/165 (20%), Positives = 65/165 (39%), Gaps = 39/165 (23%)

Query: 444 ERVLITTLTKR-----LAEELTEYLAKRNVKARYLHSDIDTIERTE-------------- 484
           +R+ I T  +R     L E +   L KR  +  +LH++++TIE                 
Sbjct: 783 KRLAIKTFLRREEDGVLREAILREL-KRGGQVYFLHNEVETIENKRAKLEELIPEARVVV 841

Query: 485 ------------IIRNLRLGKFDCLVGINLLREGLDIPEVGFVGILDADKEGFLRNDKSL 532
                       ++R+    + + L+   ++  G+D+P    + I  ADK G  +    L
Sbjct: 842 AHGQMHERELERVMRDFVAQRANILLCTTIIETGIDVPTANTILIHRADKFGLAQ----L 897

Query: 533 IQTIGRAARNANSKVVLYAGKMTDSIKKAVSETERRRKLQKEHNE 577
            Q  GR  R+ +     YA  +   +     + +RR +  ++  E
Sbjct: 898 HQLRGRVGRSHHQ---AYAYLLVHDVDGLTKQAQRRLEAIQQMEE 939