Pairwise Alignments

Query, 646 a.a., excinuclease ABC subunit UvrB from Methanococcus maripaludis S2

Subject, 673 a.a., excinuclease ABC subunit B (RefSeq) from Shewanella sp. ANA-3

 Score =  689 bits (1778), Expect = 0.0
 Identities = 362/671 (53%), Positives = 471/671 (70%), Gaps = 31/671 (4%)

Query: 1   MSSPDFKLKAEFKPKGSQLEAIAGLVKDLEKNPEKSKQTLLGVTGSGKTFTIANVIEKVQ 60
           MS   F+L+++F P G Q  AIA LV  LE     + QTLLGVTGSGKTFTIANVI ++ 
Sbjct: 1   MSESVFQLESQFAPAGDQPTAIAKLVDGLESG--LACQTLLGVTGSGKTFTIANVIAQLG 58

Query: 61  KPTLVIAHNKTLAAQLYNEFKEFFPENRVEYFVSYYDYYQPESYIPQKDQYIEKDAQINP 120
           +PT+++A NKTLAAQLY E KEFFP N VEYFVSYYDYYQPE+Y+P  + +IEKDA +N 
Sbjct: 59  RPTIIMAPNKTLAAQLYGEMKEFFPNNAVEYFVSYYDYYQPEAYVPASNTFIEKDASVNA 118

Query: 121 KIEQMRLRATSAILSRRDVIIVASVSCIYGLGNPELFKEMGFELKVGEKIKRSDIIEKLV 180
            IEQMRL AT A+L R+DV+++ASVS IYGLG+P+ + +M   L+ G+ + + DI+++L 
Sbjct: 119 HIEQMRLSATKALLERKDVVLIASVSAIYGLGDPDSYMKMLLHLRQGDTMGQRDILKRLS 178

Query: 181 DIQYERNDMELVPGRFRVKGDTLDIIPGYQDDI-LRVEMFGDEIDRIYELDPKNMSKKHE 239
           ++QY RND+EL  G FR +G+ +DI P   D   +RVE+F DEI+R+ E DP        
Sbjct: 179 ELQYTRNDLELQRGTFRARGEVIDIFPADSDRYGIRVELFDDEIERLSEFDPLTGQIVKR 238

Query: 240 IDSFYMYPAKHFVIPEEDKKNAINSILKELDE----WLPNLDMLKSHRLKQKTLYDIEMI 295
           I    +YP  H+V P E    A  SI +EL E     L N  ++++ R+ ++  YDIEM+
Sbjct: 239 IARTTVYPKTHYVTPREKILEATESIKQELRERKQYLLDNNKLIEAQRIHERVQYDIEMM 298

Query: 296 EETGSCKGIENYSRHFENRKEGEPAYCLLDYFPEDFLIVIDESHQTIPQIRGMYKGDRSR 355
            E G C GIENYSR+   R  GE    LLDY P D L++IDESH T+PQI  MYKGDRSR
Sbjct: 299 VELGYCSGIENYSRYLSGRAPGEGPPTLLDYLPADGLLIIDESHVTVPQIGAMYKGDRSR 358

Query: 356 KQSLIDYGFRLPSAYDNRPLKFEEFKKYMNNVIFVSATPGEYELDNSN-QVVEQIIRPTG 414
           K +L++YGFRLPSA DNRPLKFEEF++ M   I+VSATP  YELD S  ++VEQ++RPTG
Sbjct: 359 KTTLVEYGFRLPSALDNRPLKFEEFEQLMPQTIYVSATPNPYELDKSGGEIVEQVVRPTG 418

Query: 415 LLDPEVEIRPIENQVEDIIKETEKMVEKGERVLITTLTKRLAEELTEYLAKRNVKARYLH 474
           LLDPE+E+RP+  QV+D++ E  K V   ERVL+TTLTKR++E+LTEYL +  VK RYLH
Sbjct: 419 LLDPELEVRPVSIQVDDLLSEVAKRVAVNERVLVTTLTKRMSEDLTEYLDEHGVKVRYLH 478

Query: 475 SDIDTIERTEIIRNLRLGKFDCLVGINLLREGLDIPEVGFVGILDADKEGFLRNDKSLIQ 534
           SDIDT+ER EIIR+LRLGKFD LVGINLLREGLD+PEV  V ILDADKEGFLR+++SLIQ
Sbjct: 479 SDIDTVERVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVCILDADKEGFLRSERSLIQ 538

Query: 535 TIGRAARNANSKVVLYAGKMTDSIKKAVSETERRRKLQKEHNEKHNITPQTIVKPIREKV 594
           TIGRAARN N KV+LYA ++T S+ KA+ ETERRR+ Q  +N +H I P+ +VK I + V
Sbjct: 539 TIGRAARNVNGKVILYADRITQSMAKAMGETERRREKQHAYNLEHGIVPKGVVKRITD-V 597

Query: 595 VDISDVK----------------------HIPVADIPNVIVELEAEMYEAAEALEFEKAI 632
           +D+ D +                          A + + I +LE +M+E A  LEFE+A 
Sbjct: 598 MDVDDGRDTEKGYSPSSLGKVAEPKAKRYQADAAQLSHDIDKLEKQMHEHARNLEFEQAA 657

Query: 633 KIRDTIAKLKK 643
            +RD + +L++
Sbjct: 658 ALRDEVKRLRE 668