Pairwise Alignments

Query, 175 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2

Subject, 713 a.a., FMN-binding domain-containing protein (RefSeq) from Shewanella loihica PV-4

 Score = 53.1 bits (126), Expect = 1e-11
 Identities = 42/184 (22%), Positives = 78/184 (42%), Gaps = 30/184 (16%)

Query: 8   IFGR-YYCGFICPINTIIHPIQVLKDKAGFSSKNIPNFLKSEKPRLLLMLLFILGLGITV 66
           ++GR  YCG++CP   +   + V+          +P F   E+   +  L+ +   G+++
Sbjct: 512 LWGRAVYCGWLCPFGALQELVNVMGRYFKLPQVELP-FAVHERLWAIKYLILLALFGLSL 570

Query: 67  NAMINGSRFP----------------LPIIIISIGVLTTLLFNENSWHRYLCPWGFLLGI 110
           +++    +F                  P I+ ++ ++ + LFN  ++ RYLCP G  L +
Sbjct: 571 DSLAMAEQFAEIEPFKTTFLLKFDREWPFILWALLMIFSSLFNRKTFCRYLCPLGAALSV 630

Query: 111 TGHFSKYG-LNVNEKC-ISCKICENVCPAEAVKVENKQNAEIFKKHCLLCLKCEL----- 163
           +     +  L    +C   CK C   C  +A+      N  I  + C  CL C++     
Sbjct: 631 SNSVRLFDWLKRRPECGTPCKTCAKECEIQAI----HPNGVINMRECHYCLDCQVTYFNE 686

Query: 164 -KCP 166
            KCP
Sbjct: 687 EKCP 690



 Score = 23.5 bits (49), Expect = 0.009
 Identities = 11/42 (26%), Positives = 20/42 (47%)

Query: 76  PLPIIIISIGVLTTLLFNENSWHRYLCPWGFLLGITGHFSKY 117
           P+  I+     +T LL+    +  +LCP+G L  +     +Y
Sbjct: 497 PIIFILWCAAAVTMLLWGRAVYCGWLCPFGALQELVNVMGRY 538