Pairwise Alignments

Query, 175 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2

Subject, 481 a.a., 4Fe-4S binding protein from Methanococcus maripaludis JJ

 Score = 48.9 bits (115), Expect = 1e-10
 Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 8/73 (10%)

Query: 102 CPWGFLLGITGHFSKYGLNVNEKCISCKICENVCPAEAVKV-ENKQNAEIFKKHCLLCLK 160
           CP G  +   G        V+  C+ C++C   CP +A+ + E  +   I KK C+ C  
Sbjct: 305 CPQGVRINKGGF-------VDGGCVLCEVCIKECPEDAISIKERSKFTSIDKKECIACGT 357

Query: 161 CELKCPTNAITYK 173
           C + CP +AIT K
Sbjct: 358 CSMVCPNDAITVK 370



 Score = 48.1 bits (113), Expect = 2e-10
 Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 13/74 (17%)

Query: 115 SKYGLNVNEKCISCKICENVCPAEAVKVE--------NKQNAE-IFKKHCLLCLKCELKC 165
           SK+     ++CI+C  C  VCP +A+ V+        NK ++E IF  +C+LC KC + C
Sbjct: 342 SKFTSIDKKECIACGTCSMVCPNDAITVKIDSLNFSGNKVHSEVIFNDNCVLCEKCAIHC 401

Query: 166 PTNAIT----YKKL 175
           P + I     YKK+
Sbjct: 402 PRDVIENTSGYKKV 415



 Score = 44.7 bits (104), Expect = 2e-09
 Identities = 24/65 (36%), Positives = 38/65 (58%), Gaps = 8/65 (12%)

Query: 116 KYGLNVNEKCISCKICENVCPAEAVK------VENKQNAEIF-KKHCLLCLKCELKCPTN 168
           KYG  V E CI C  C + CP +A++      V+ K++ +   +KHC+ C  C  KCP+N
Sbjct: 221 KYG-EVTENCILCGNCISKCPKDALEISEFKVVKTKEDVKANPEKHCINCGLCVDKCPSN 279

Query: 169 AITYK 173
           A+ ++
Sbjct: 280 ALRFE 284



 Score = 42.4 bits (98), Expect = 1e-08
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 2/57 (3%)

Query: 118 GLNVNEK-CISCKICENVCPAEAVKVENKQNAEIFKK-HCLLCLKCELKCPTNAITY 172
           G  VN K C  C IC+N CP + + +      + +    C++C  C  +CP NA  Y
Sbjct: 67  GYYVNRKLCTGCGICKNACPIDIIDIREDSTGKAYPTGMCVMCGLCTTECPYNARLY 123



 Score = 40.8 bits (94), Expect = 3e-08
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 6/46 (13%)

Query: 125 CISCKICENVCPAEAVKVENKQNAEIFKKHCLLCLKCELKCPTNAI 170
           C  C IC  VCP +A+K           ++C+LC  C  KCP +A+
Sbjct: 205 CTRCNICNEVCPVDAIKYGE------VTENCILCGNCISKCPKDAL 244



 Score = 38.1 bits (87), Expect = 2e-07
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 120 NVNEKCISCKICENVCPAEAVKVENKQNAEIFKKHCLLCLKCELKCP 166
           N  + CI+C +C + CP+ A++ EN +      K C LC  C  +CP
Sbjct: 261 NPEKHCINCGLCVDKCPSNALRFENGK-ILYDPKTCTLCNTCVKECP 306



 Score = 37.0 bits (84), Expect = 5e-07
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 5/46 (10%)

Query: 125 CISCKICENVCPAEAVKVENKQNAEIFKKHCLLCLKCELKCPTNAI 170
           C+ C +C  +CP +A+        EI  + C  C  C   CPT AI
Sbjct: 430 CVKCGLCTIICPNDAI-----DKGEITTERCEYCSACVNICPTRAI 470



 Score = 34.7 bits (78), Expect = 3e-06
 Identities = 15/50 (30%), Positives = 23/50 (46%)

Query: 125 CISCKICENVCPAEAVKVENKQNAEIFKKHCLLCLKCELKCPTNAITYKK 174
           CI+C  C   CP  A+K        + +K C  C  C+  CP + I  ++
Sbjct: 45  CITCGTCAKECPTGAIKKNEYGGYYVNRKLCTGCGICKNACPIDIIDIRE 94



 Score = 34.3 bits (77), Expect = 3e-06
 Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 6/51 (11%)

Query: 122 NEKCISCKICENVCPAEAVKVENKQNAEIFKKHCLLCLKCELKCPTNAITY 172
           +EKC+ C  C  VCP + +       AEI    C  C  C   CP +AI Y
Sbjct: 178 SEKCVECGKCIYVCPKDTI-----IEAEIV-DGCTRCNICNEVCPVDAIKY 222



 Score = 33.9 bits (76), Expect = 4e-06
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 12/54 (22%)

Query: 123 EKCISCKI-----CENVCPAEAVK-VENKQNAEIFKKHCLLCLKCELKCPTNAI 170
           E+C +CK      C  VCP  A+K ++ K  +      C+ C  C  +CPT AI
Sbjct: 13  EECENCKSKEISKCMEVCPTNAIKMIDGKAFS------CITCGTCAKECPTGAI 60



 Score = 29.3 bits (64), Expect = 1e-04
 Identities = 9/25 (36%), Positives = 14/25 (56%)

Query: 123 EKCISCKICENVCPAEAVKVENKQN 147
           E+C  C  C N+CP  A+++    N
Sbjct: 453 ERCEYCSACVNICPTRAIRIYRTWN 477