Pairwise Alignments

Query, 198 a.a., class III signal peptide-containing protein from Methanococcus maripaludis S2

Subject, 227 a.a., class III signal peptide-containing protein from Methanococcus maripaludis JJ

 Score = 45.8 bits (107), Expect = 6e-10
 Identities = 48/197 (24%), Positives = 89/197 (45%), Gaps = 11/197 (5%)

Query: 3   NRGQLSIEMVILVLAVLVSGSYVALDLSKGAFETTAVNDVQESSYCGFTPDFGATSIDKA 62
           ++GQ+SIE+++L++AVL++G  V+  ++K  FE   ++DV+E +Y  F        I   
Sbjct: 5   SKGQISIELILLMMAVLLAGILVSFHMTKFTFEGDILSDVREGTYQVFAISIYEPPI--- 61

Query: 63  LVKLTTGIININPNAAVTNNEFNATYTNTTDNTVVTYSLDNVHPNLIKNYADG-TIVKVP 121
              L    + I+P+  + N        +T ++T + Y  D     L      G ++ +  
Sbjct: 62  YYSLNFSDVKISPSTNLENAWLQ--INDTGNDTYLWYYSDGTFKGLANTSDPGESVTEDN 119

Query: 122 LNETWKNFTASNIILRMKSDYVCTINGENVSM-ESNCFEITA-PLGSDSFDFQMSAGTG- 178
           L        AS+II R       + N   +   +   FEI A  + ++   + ++ G   
Sbjct: 120 LVLLPHEGYASDIIFRSNIPTAMSWNSYELDFNDIKKFEIIANDVENNPISYSLTHGDSP 179

Query: 179 --AGQYYLRLVDQEVTI 193
             + Q YL +   +VTI
Sbjct: 180 ETSNQAYLNIKANDVTI 196