Pairwise Alignments

Query, 417 a.a., sodium:proton antiporter from Methanococcus maripaludis S2

Subject, 574 a.a., sodium/hydrogen exchanger family/TrkA domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  105 bits (261), Expect = 5e-27
 Identities = 88/354 (24%), Positives = 169/354 (47%), Gaps = 22/354 (6%)

Query: 11  SLLFIIGSFIAKLADRIGIPDIPLLLITGLLIGP--VLGLISPIYAQTIFSFVGTIGLII 68
           +LL  +   ++ ++ R+GIP + + L  G+L G     G++   Y+      V    L I
Sbjct: 14  ALLTAVSVLLSPMSSRLGIPILLIFLAVGILAGEDGPGGILFDDYSTAYL--VSNFALAI 71

Query: 69  LLLVGAFEMRWIVLKRVLKTVLKLDTIGLVISLLISGIIFSFIYALPFTNPIGFIYGAVN 128
           +LL G    R    +  L   L L T G+ I+  I+G++ ++++ L +    G + GA+ 
Sbjct: 72  ILLDGGMRTRVASFRVALWPALSLATFGVAITTSITGVMAAWLFDLHWLQ--GLLVGAIV 129

Query: 129 CATDPATLIPIFSKSDVDPKIAVTLEAESVFNDPLGIVATT---LTLSSLGLSKSVNPIL 185
            +TD A +  +     ++ ++  TLE ES  NDP+ +  T      L+++G   S + +L
Sbjct: 130 GSTDAAAVFSLLKGRSLNERVGATLEIESGSNDPMAVFLTVTLIAILANVGAELSASFML 189

Query: 186 DFVMLAFG-GLALGYVGGKIFEFVVSKDEFGEYIAPLGVGSAMALWFFGEDVAPHFLGYG 244
              +  FG G+ LG  GG +   +V+  +  E +  + V S   + +   +        G
Sbjct: 190 ISFIKQFGLGVLLGLGGGWLLWKLVNVSKLAEGLYSILVLSGGLMIYATSN------KLG 243

Query: 245 LSGYMAVAIMGLYIGNVVTKKPKNSKDMHKMAEFCTDLSSLTRILIFVFLGASISLPLLK 304
            SG +++ ++GL++GN      K ++  H +      ++ +++I +F+ LG  ++   L 
Sbjct: 244 GSGILSIYLVGLFLGN------KPTRGRHAILNVLDGMTWVSQIGMFLVLGLLLTPSDLL 297

Query: 305 SFGIYGLLCAIGTLFIARPIGVFIATAIPPVSSLKERIYFALEGPRGVVPAALA 358
              + GL  A G +  ARP+ V+++         ++R + +  G RG VP  LA
Sbjct: 298 DIWLPGLALAFGMILFARPLAVWLSLLPFKSFGSRDRWFISWVGLRGAVPIILA 351