Pairwise Alignments

Query, 447 a.a., MATE family efflux transporter from Methanococcus maripaludis S2

Subject, 432 a.a., Na+ driven multidrug efflux pump from Pseudomonas fluorescens FW300-N2E2

 Score =  122 bits (306), Expect = 2e-32
 Identities = 96/416 (23%), Positives = 180/416 (43%), Gaps = 22/416 (5%)

Query: 25  IIGMLIMALYNIVDGFFIGRWVGTAAFTGIALIFPFQMMIMAFGVTFGIGGSSLLSRKLG 84
           ++   + ++    +  +IG+ +GT A   ++ +FP     +A  +  G G   L+ +  G
Sbjct: 2   VLSNFLQSMSGTFNSIYIGQMLGTQALAAVSGMFPIVFFFIALVIGLGAGAGVLIGQAYG 61

Query: 85  EGNLDFARKAGGNAISSVLILSVLITIVGVVFMVPILNLLGTSADIFPYAKDYYEIILYG 144
            G     +   G+ +    I+ +   ++G VF    L  LGT AD+   A  Y  ++L+ 
Sbjct: 62  AGETGTVKAIAGSTLLLGAIIGLAAAVLGSVFARQALQGLGTPADVLEDAVSYARVMLWI 121

Query: 145 TIFNSYLVAANNLVRAEGMAKVAMFAMVVPAIINIILDPILIIVF----NMGIKGAAIAT 200
                  V    L+R        M A++    + ++L P LI  +     MGI+ AA+A 
Sbjct: 122 LPMLLIFVLFTQLLRGVSDTVSPMLALLTSTSVGLLLTPALIRGWLGLPQMGIQSAALAG 181

Query: 201 VLSQIIGVIYIL------KHQFGKNTSIKYAMNDFLINLKILKETVFIGASEFAKLIISS 254
           ++     +  +       +H    + ++  AM    ++++IL + + IG     ++++ S
Sbjct: 182 LVGTASAMAMLAWRLNRREHALAPDRALFAAMR---LDMEILGKVLRIGLPTGLQMVVIS 238

Query: 255 ILLILGNNLLGIYGGDIAIAIYGVIMRIAMLLLMPVLGIVQGFQPIVGYNYGKGQLNRVS 314
           +  ++   L+  +G   A A YG + +I   +  P L I      +     G G+L R+ 
Sbjct: 239 LSELVILTLVNSHGSQ-ATAAYGAVTQIVNYVQFPALSIAITASILGAQAIGAGRLERLG 297

Query: 315 ESIKLALV----GTSGLCLLGFILVMIFPEKFIQIFITDPEVISQGVFATRIFFMFSFLI 370
             ++  L+     T GL +LG++L        + +FITDP    Q      I      + 
Sbjct: 298 PILRTGLLINLWLTGGLVVLGYLL----SHWLLGLFITDPAARVQAEHLLHIMLWSLLVF 353

Query: 371 GAQMTIGGLYQSLGKAKPAFIISCARQTLFLMPALIILPLFFGLNGIWFSFPIGDL 426
           G Q  +GG+ ++ G       IS     +  +PA  +L   FGL G+W +FP+  L
Sbjct: 354 GFQAIVGGIMRASGTVLVPVAISIFCIVVVQVPAAYLLDAHFGLQGVWVAFPVAYL 409