Pairwise Alignments

Query, 447 a.a., MATE family efflux transporter from Methanococcus maripaludis S2

Subject, 454 a.a., putative Na+-driven multidrug efflux pump (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  120 bits (302), Expect = 7e-32
 Identities = 99/400 (24%), Positives = 183/400 (45%), Gaps = 19/400 (4%)

Query: 13  VKKLLVKLSVPAIIGMLIMALYNIVDGFFIGRWVGTAAFTGIALIFPFQMMIMAFGVTFG 72
           V K+L++ +VP +I  ++ ALY   D F +G++  +A+   +A+    Q+M    G+  G
Sbjct: 11  VPKVLLQYAVPFLIANVLQALYGGADLFVVGQYDDSASVAAVAI--GSQVMQTITGIILG 68

Query: 73  IGGSSLLSRKLGEGNLDFARKAG--GNAISSVLILSVLITIVGVVFMVPILNLLGTSADI 130
           I   + +   +  G  D  + A   G+++    I+ VL+T+V VVF   I  L+ T  + 
Sbjct: 69  ITTGTTVLIAIATGAKDDKKVAFTIGSSVWLFSIIGVLLTLVMVVFHGRIAELMHTPIEA 128

Query: 131 FPYAKDYYEIILYGTIFNSYLVAANNLVRAEGMAKVAMFAMVVPAIINIILDPILIIVFN 190
               K Y  +   G +F         ++R  G +K  ++ + +  +INI+LD IL+  F+
Sbjct: 129 MADTKSYILVCSAGILFIVGYNVVCGILRGLGDSKTPLYFVALACVINIVLDFILVGYFH 188

Query: 191 MGIKGAAIATVLSQIIGVIYILKHQFGKNTSIKYAMNDFLINLKILKETVFIGAS---EF 247
           +G  GAA+AT+ +Q +  +  L   +      ++   D  +N  + K+ + +GA    + 
Sbjct: 189 LGATGAAVATITAQGVSFMISLWFLYRHGFHFEFTRKDIRLNRNLAKKVMTLGAPIALQD 248

Query: 248 AKLIISSILLILGNNLLGIYGGDIAIAIYGVIMRIAMLLLMPVLGIVQGFQPIVGYNYGK 307
           A + IS +++ +  N +G+    IA A  GV+ +I +  ++P + I      +   NYG 
Sbjct: 249 ALINISFLIITVIVNQMGV----IASASLGVVEKIIVFAMLPPMAISSAVATMTAQNYGA 304

Query: 308 GQLNR----VSESIKLALVGTSGLCLLGFILVMIFPEKFIQIFITDPEVISQGVFATRIF 363
           G + R    ++  I +A V    +C+    L    PE     F  D  V+S      R +
Sbjct: 305 GLIQRMNRCLASGIGIAFVFGVSVCVYSQFL----PETLTAFFTKDAAVVSMAAEYLRGY 360

Query: 364 FMFSFLIGAQMTIGGLYQSLGKAKPAFIISCARQTLFLMP 403
            +   ++     I   +   G +    I S     LF +P
Sbjct: 361 SIDCIVVSFVFCINSYFSGQGNSLFPMIHSLIATFLFRIP 400