Pairwise Alignments

Query, 219 a.a., archaeal proteasome endopeptidase complex subunit beta from Methanococcus maripaludis S2

Subject, 259 a.a., archaeal proteasome endopeptidase complex subunit alpha from Methanococcus maripaludis JJ

 Score =  100 bits (250), Expect = 2e-26
 Identities = 77/221 (34%), Positives = 116/221 (52%), Gaps = 14/221 (6%)

Query: 6   EYHKEYMK-GTTTVGLLCNDGVVLATDKRATMGNLIADKEAKKLYKIDDYIAMTIAGSVG 64
           EY +E ++ GTT VG+ C DGVVLA D+R T   LI     +K+++IDD+I    +G V 
Sbjct: 27  EYAREAVRRGTTAVGIKCKDGVVLAVDRRIT-SKLIDVSSIEKIFQIDDHIVAATSGLVA 85

Query: 65  DAQSLIRLISAEAKIYKMRTGNNMTPLSCTTLISNVL-----HGNRHYPLLTQLILGGYD 119
           DA+ LI     EA++ ++  G  +T  +    I ++      HG    P    L++ G D
Sbjct: 86  DARVLIDRARIEAQMNRVSYGEAITVEALAKKICDIKQAYTQHGGAR-PFGLALLITGID 144

Query: 120 LINGAKLFSLDPVGGINEESSFTATGSGSPTAYGVLESEYKSDIAIEKGLLIAVKALSSA 179
             + A+LF  DP G + E  + TA GSG P A  VLES+Y  ++ + +G+ +A+ ALS  
Sbjct: 145 R-HSARLFETDPSGALIEYKA-TAIGSGRPIAMEVLESKYDENMTVSEGMELALYALSKT 202

Query: 180 MQRDAYSGNGISLAHINKDG--VKLYSDAEIEGFLKKINRK 218
            +        I +A I   G  V+  S  EIE  +K +  K
Sbjct: 203 TEE--LKPENIDMAIIKDSGKLVEKISVNEIEKIVKAVYEK 241