Pairwise Alignments

Query, 635 a.a., beta-CASP ribonuclease aCPSF1 from Methanococcus maripaludis S2

Subject, 469 a.a., Predicted exonuclease of the beta-lactamase fold involved in RNA processing from Pseudomonas stutzeri RCH2

 Score =  193 bits (491), Expect = 1e-53
 Identities = 141/475 (29%), Positives = 227/475 (47%), Gaps = 33/475 (6%)

Query: 183 SFLGGSREVGRTCLYHQTPES-RILVDCGINIAVEDEKAFPHFDAPEFSIEEIDAVVVTH 241
           SFLG  ++V  +C   +T +  R+L++CG++    +E++  +  A  F    +DAVV++H
Sbjct: 5   SFLGAIQQVTGSCYLIETHDGIRVLLECGMHQGRREEES-DNRAAFAFDPTTLDAVVLSH 63

Query: 242 AHLDHCGFIPGLFRYGYDGPVYCTKPTRDLMTLLQKDYVDITEKEGK------------- 288
           AH+DH G +P L   GY GPV+CT  T +L+ L+  D   I EK+ +             
Sbjct: 64  AHIDHSGLLPRLVALGYRGPVHCTDATAELLELMLLDSAQIQEKDAEWENKWRARIGKPM 123

Query: 289 -NVPYSSKDIKNCIKHTIPLDYGVTTDIAPAIKLTMHNAGHILGSAIAHCHVGD--GLYN 345
               Y+  D +  +    P  YG T ++A  + +T H+AGHILGS+I    V D      
Sbjct: 124 IQPLYTRVDAERMLSQREPHAYGETFEVAQGVVVTFHDAGHILGSSIVQMDVSDHGRTRR 183

Query: 346 VAYTGDIKFEASRLLEPAVCQFPRLETLIIESTYGGYDDVLPERDETEKEFLRVIAETIA 405
           + ++GD+    S L+ P        + +++ESTYG  D      ++T +E   ++ +   
Sbjct: 184 LVFSGDLGNACSPLMHPPTV-LKEADVVLMESTYGDRDH--RSHEDTVEELAGILQQAHR 240

Query: 406 RKGKAIIPVFGIGRAQELMLVLEEGYNQG-IFNAPVYLDG-MIWEATAIHTAYPEYLSKN 463
             G  ++P F +GR Q+L+  L   Y +G +    V+LD  M   A AI++ Y + L  N
Sbjct: 241 DGGNVLMPSFAVGRTQDLIYYLGRFYREGRLPQQAVFLDSPMAIGANAIYSHYKDQLDLN 300

Query: 464 MRNRIFHEGDNPFLSE----VFKKVKNTNDRRNIMDSDEPGIILTTSGMLSGGPSVEYFK 519
             +           +E    + K      +   I       II+  SGM +GG  + +FK
Sbjct: 301 GIDAALSGTSGKLYAERWLPILKPTPTPEESMAINRFKSGVIIIAGSGMCTGGRILHHFK 360

Query: 520 NLADDEKNSIVFVGYQSEGTLGRKIQKGFKEIPLMGKNGRSKAVKVNLSVHTLEGFSGHS 579
           +    E+  +V  G+Q+ GTLGR I  G   + L+      + + VN  +HTL GFS H+
Sbjct: 361 HNLWREECHLVIPGFQARGTLGRAIVDGAGSVKLL-----HQRIAVNAKIHTLGGFSAHA 415

Query: 580 DRKQLIKYLRKLKPIPDRILTVHGEVSKCIDLASTAYKLFKKETKAPMNLDSIRL 634
            + QLI ++   +  P+  L VHGE+ K   L          E + P   D I L
Sbjct: 416 GQSQLIDWVSNFENRPELYL-VHGELEKMQVLQQAIRDRLNWEARIPEPGDRIAL 469